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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G165800.4.p | ||||||||
Common Name | GLYMA_05G165800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 1352aa MW: 155260 Da PI: 5.7497 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.8 | 1.9e-22 | 1272 | 1332 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy WrKYG++++ g+++pr YYrC+++ Cp++k+v+r +e+p ++ei+Ye +H++ Glyma.05G165800.4.p 1272 DDGYIWRKYGKRQILGAKYPREYYRCAHKfvhWCPARKRVQRLDENPATIEIIYEHRHTCA 1332 8***************************99989*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 2.75E-32 | 8 | 150 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 3.8E-13 | 11 | 125 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 20.683 | 12 | 147 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 2.4E-24 | 13 | 147 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 3.4E-30 | 14 | 175 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF00931 | 1.1E-6 | 388 | 573 | IPR002182 | NB-ARC |
SuperFamily | SSF52540 | 4.41E-8 | 392 | 612 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52058 | 2.55E-35 | 700 | 899 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.3E-29 | 703 | 865 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 5.7E-9 | 733 | 793 | IPR001611 | Leucine-rich repeat |
SMART | SM00369 | 3.7 | 757 | 780 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 5.2 | 804 | 827 | IPR003591 | Leucine-rich repeat, typical subtype |
SuperFamily | SSF52058 | 2.55E-35 | 949 | 1137 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.3E-29 | 1051 | 1080 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:2.20.25.80 | 3.1E-21 | 1266 | 1332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.221 | 1266 | 1329 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-20 | 1269 | 1332 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-29 | 1271 | 1333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-21 | 1272 | 1331 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1352 aa Download sequence Send to blast |
MASSALTQSS SFSYDVFLSF HATDTRSNFT DFLFQALIRK GIVAFKDESR APDQAIEDSR 60 LFIVVLSKNY AFSTQCLHEL SQIFHCVEFS PRRVLPIFYD VDPSDVRKQT GWYEKAFSKY 120 EERFLVNKKG METVQTWRKA LTQVANLSGW YIRNKPQYTE IEEFVQYTIS ILSSKFSTLQ 180 NKAEGTLSDK DEFSYNELSG EAEGTLSDKD EFSYNELSGE AEGTLSDKDE FSYNELSGLM 240 RIRDFISLVL TYPVKLVEED ILRSWISAFP EWKAQLLSTG DDTVMDKPWC VLTKKALGSM 300 KGFMPMEIIS KVERGRRSIF SRNDVEAIPE AILHQTVDLA VNQLIQTLFC GDYCSRYIRL 360 LTRNLAEKRY VVDKIVAAVE DKHNMFGIDK DFLRALWINA STYETDAEFR VQEEINTMME 420 VDDMWPMEVD NMLGTLFIEE KMGSNGQLVI VVDADSNKKL DLQKLRFPTG IVVLITTEPS 480 TQAEKDGDFR IACTMDLNIW TQDHLLPWKV FCSYVGSCIS SSMVSSSMAI QKIAVEIVKE 540 CHGHLLAIVL LSKYLMYVQD FKQWELALDK LSSLNPSYDY QDSDRIGISR VMVNAFVNII 600 WEDIDDAQKL CLELSLPVHN IKNGVRDDIL VSDWAKIILG YTQELGEYRR QLQYHMKELL 660 DRFVLLKYES GDVYLPIETY DIIKSLHTSK PSILRHGALG LTEPPYIGRW HSLIRIELMD 720 NKICELPQSP DCPKLKVLLL QGNVDLMDIP DSFFNHMPLL QHLDLSYTSI RDLPPSVSKL 780 IQLQKFYLRG CDLFMELPHQ IGQLKNLKEL DLDGTLITHL PIEIRELINL QILSLCFDGT 840 SRSTIIPPGL VSNLTQLNYL SINVDPEDEQ WNENVISVLG EIFFGLWNLQ RLSIYIPKAD 900 LLEFIPAEKS LNFRLVVGQH MRRLISRVPP ELETKFKHCD YSIKFVNGVN IPNGVKMNLG 960 RFKALYLDRH MTIKSLSDFD LRNLWGLEVC ILAECNEMET IVSGSNSPDG PASLMLKFLS 1020 VFYMKNLRSV CEGSSPFFLF LKSIALHTCP MLTTIFTLDS LKKLSFLEEI IVEDCPKLTT 1080 LISHATPEQK PVFFLPKLRI ISLLYLPELV NIFNGMHVGP FIEEMIFYYC PRLQSLSKSE 1140 LSSKSLKIIK GESIWWEALK WNEAEWGDAG RPNYFERIFS PINEEADMMN QLAALQETQL 1200 NEYHNTTYQG ISSSKQSIAK ILAPVSSVGR GSSNSEAQKR KVVAEPKIFQ EGYKRREVWT 1260 AKIRVNAEGC YDDGYIWRKY GKRQILGAKY PREYYRCAHK FVHWCPARKR VQRLDENPAT 1320 IEIIYEHRHT CAREQNLIIK SGDEASQSCK L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ku7_A | 2e-34 | 7 | 152 | 1 | 148 | TIR-NB-LRR type resistance protein RPV1 |
5ku7_B | 2e-34 | 7 | 152 | 1 | 148 | TIR-NB-LRR type resistance protein RPV1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9752 | 2e-35 | pod |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 27423483 | 2e-35 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G165800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984271.1 | 0.0 | uncharacterized protein LOC102661979 isoform X4 | ||||
TrEMBL | A0A0R0K379 | 0.0 | A0A0R0K379_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G29921.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 6e-21 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G165800.4.p |