PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G165800.3.p
Common NameGLYMA_05G165800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 1348aa    MW: 154742 Da    PI: 5.8762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G165800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.69.3e-1712761332259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                           dDgy WrKYG++++ g+++pr  ++   + Cp++k+v+r +e+p ++ei+Ye +H++ 
  Glyma.05G165800.3.p 1276 DDGYIWRKYGKRQILGAKYPRCAHKFV-HWCPARKRVQRLDENPATIEIIYEHRHTCA 1332
                           8*******************9877764.48*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522002.75E-328150IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.7E-1311125IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010420.68312147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002552.4E-2413147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015823.4E-3014175IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF009311.1E-6388573IPR002182NB-ARC
SuperFamilySSF525404.41E-8392612IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520582.55E-35700899IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.2E-29703865IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138555.7E-9733793IPR001611Leucine-rich repeat
SMARTSM003693.7757780IPR003591Leucine-rich repeat, typical subtype
SMARTSM003695.2804827IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520582.55E-359491137IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.2E-2910511081IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081114.25212701329IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-1512701332IPR003657WRKY domain
SuperFamilySSF1182903.66E-1512731332IPR003657WRKY domain
SMARTSM007745.5E-2412751333IPR003657WRKY domain
PfamPF031065.9E-1712761331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1348 aa     Download sequence    Send to blast
MASSALTQSS SFSYDVFLSF HATDTRSNFT DFLFQALIRK GIVAFKDESR APDQAIEDSR  60
LFIVVLSKNY AFSTQCLHEL SQIFHCVEFS PRRVLPIFYD VDPSDVRKQT GWYEKAFSKY  120
EERFLVNKKG METVQTWRKA LTQVANLSGW YIRNKPQYTE IEEFVQYTIS ILSSKFSTLQ  180
NKAEGTLSDK DEFSYNELSG EAEGTLSDKD EFSYNELSGE AEGTLSDKDE FSYNELSGLM  240
RIRDFISLVL TYPVKLVEED ILRSWISAFP EWKAQLLSTG DDTVMDKPWC VLTKKALGSM  300
KGFMPMEIIS KVERGRRSIF SRNDVEAIPE AILHQTVDLA VNQLIQTLFC GDYCSRYIRL  360
LTRNLAEKRY VVDKIVAAVE DKHNMFGIDK DFLRALWINA STYETDAEFR VQEEINTMME  420
VDDMWPMEVD NMLGTLFIEE KMGSNGQLVI VVDADSNKKL DLQKLRFPTG IVVLITTEPS  480
TQAEKDGDFR IACTMDLNIW TQDHLLPWKV FCSYVGSCIS SSMVSSSMAI QKIAVEIVKE  540
CHGHLLAIVL LSKYLMYVQD FKQWELALDK LSSLNPSYDY QDSDRIGISR VMVNAFVNII  600
WEDIDDAQKL CLELSLPVHN IKNGVRDDIL VSDWAKIILG YTQELGEYRR QLQYHMKELL  660
DRFVLLKYES GDVYLPIETY DIIKSLHTSK PSILRHGALG LTEPPYIGRW HSLIRIELMD  720
NKICELPQSP DCPKLKVLLL QGNVDLMDIP DSFFNHMPLL QHLDLSYTSI RDLPPSVSKL  780
IQLQKFYLRG CDLFMELPHQ IGQLKNLKEL DLDGTLITHL PIEIRELINL QILSLCFDGT  840
SRSTIIPPGL VSNLTQLNYL SINVDPEDEQ WNENVISVLG EIFFGLWNLQ RLSIYIPKAD  900
LLEFIPAEKS LNFRLVVGQH MRRLISRVPP ELETKFKHCD YSIKFVNGVN IPNGVKMNLG  960
RFKALYLDRH MTIKSLSDFD LRNLWGLEVC ILAECNEMET IVSGSNSPDG PASLMLKFLS  1020
VFYMKNLRSV CEGSSPFFLF LKSIALHTCP MLTTIFTLDS LKKLSFLEEI IVEDCPKLTT  1080
LISHATPEQK PVFFLPKLRI ISLLYLPELV NIFNGMHVGP FIEEMIFYYC PRLQSLSKSE  1140
LSSKSLKIIK GESIWWEALK WNEAEWGDAG RPNYFERIFS PINEEADMMN QLAALQETQL  1200
NEYHNTTYQG ISSSKQSIAK ILAPVSSVGR GSSNSEAQKR KVVAEPKIFQ EVTKKGYKRR  1260
EVWTAKIRVN AEGCYDDGYI WRKYGKRQIL GAKYPRCAHK FVHWCPARKR VQRLDENPAT  1320
IEIIYEHRHT CAREQNLIIK SGDERAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A2e-3471521148TIR-NB-LRR type resistance protein RPV1
5ku7_B2e-3471521148TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G165800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984271.10.0uncharacterized protein LOC102661979 isoform X4
TrEMBLA0A0R0K3630.0A0A0R0K363_SOYBN; Uncharacterized protein
STRINGGLYMA05G29921.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-16WRKY DNA-binding protein 55