PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G148300.3.p | ||||||||
Common Name | GLYMA_05G148300, LOC100786880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CAMTA | ||||||||
Protein Properties | Length: 979aa MW: 108754 Da PI: 5.432 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 182.9 | 3.6e-57 | 13 | 129 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 ++e ++rwlk+ e++ iL+n+ek+++t+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e+ Glyma.05G148300.3.p 13 HQEaQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQ 102 677799************************************************************************************ PP CG-1 91 nptfqrrcywlLeeelekivlvhylev 117 nptfqrr+yw+L+ ++++ivlvhy+++ Glyma.05G148300.3.p 103 NPTFQRRSYWMLDPAYDHIVLVHYRNT 129 *************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 83.094 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.8E-79 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.3E-49 | 15 | 128 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 9.8E-9 | 417 | 505 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.09E-17 | 419 | 503 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.5E-7 | 419 | 502 | IPR002909 | IPT domain |
CDD | cd00102 | 2.08E-4 | 419 | 504 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-16 | 614 | 709 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.539 | 615 | 707 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.79E-17 | 617 | 709 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.12E-14 | 620 | 707 | No hit | No description |
Pfam | PF12796 | 5.9E-8 | 631 | 709 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.06 | 648 | 680 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0038 | 648 | 677 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2200 | 687 | 716 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 83 | 765 | 787 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.51 | 767 | 795 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.14E-5 | 816 | 866 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 3.5 | 819 | 841 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.712 | 820 | 849 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.025 | 822 | 840 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.6E-5 | 842 | 864 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.34 | 843 | 868 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.2E-5 | 844 | 864 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence Send to blast |
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQFTQ EPPQQPTSGS LFLFNKRVLR 60 FFRKDGHNWR KKRDGRTVGE AHERLKVGNV EALNCYYAHG EQNPTFQRRS YWMLDPAYDH 120 IVLVHYRNTS EGKLSSGAGA QLSPSSSSVY TQSPSPYSTQ NPGSTSILGD SYEPNQSFSS 180 PGSTEVTSDM FVLNNKMGHM DGTDTESGTS PELEVTQALR RLEVQLSLNE DNFEDIVSFG 240 SKHETTHDSN PQHDQRVISN QEQSAAFSGP DDQGLFYDGY NGRQGDGGEF YHELIDHGYP 300 DGNEKALWTE VLESCKSSSA VKLPQKNVYM PVENLENSVS SARRVPVSNQ ENSHWLNFNT 360 AVFSQPQGVD EVKFPVYSSM VETQVINSDY YETLFDQSQI GAPPDANSSL TVAQKQKFTI 420 KTISPEWGYA TETTKVIVVG SLLCHPSDSA WACMFGDVEV PVEIIQDGVI SCEAPSHLPG 480 KVTLCITSGN RESCSEVREF EYRDKTNSCT QCTQSETEAT RSPEELLLLV RLEQMLLSAS 540 TIKNDNIESG IPLIKQKADD DSWSHIIEAL LVGSGTSTGT VDWLLEELLK DKLQQWLSCR 600 SQEKDEETGC SLSKKEQGII HMVAGLGFEW ALNPILTCGV NINFRDINGW TALHWAARFG 660 REKMVASLIA SGASAGAVTD PNAQDPTGKT AASIAAGNGH KGLAGYLSEI AVTSHLSSLT 720 LEESELSKSS AELQADMTVN SVSKENLTAS EDQASLKDTL AAIRNVTQAA ARIQSAFRSH 780 SFRKRRAREV AASAGGIGTI SEISAMSKLA FRNSREYNSA ASAALSIQKK YRGWKGRKDF 840 LALRKKVVKI QAHVRGYQVR KHYKVIWAVG ILDKVVLRWR RKGAGLRGFR QEMDINENEN 900 EDEDILKVFR KQKVDVEIEE AVSRVLSMVD SPDAREQYHR MLEKYRQAKA ELAGTSDEAS 960 LSTSVGDDLF IDDFYPFP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.13290 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G148300.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096537 | 0.0 | BT096537.1 Soybean clone JCVI-FLGm-10A15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580123.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X3 | ||||
Refseq | XP_028232710.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X3 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0R0K5M7 | 0.0 | A0A0R0K5M7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G28090.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G148300.3.p |
Entrez Gene | 100786880 |
Publications ? help Back to Top | |||
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