PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G148300.3.p
Common NameGLYMA_05G148300, LOC100786880
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 979aa    MW: 108754 Da    PI: 5.432
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G148300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.93.6e-57131292117
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          ++e ++rwlk+ e++ iL+n+ek+++t+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e+
  Glyma.05G148300.3.p  13 HQEaQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQ 102
                          677799************************************************************************************ PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                          nptfqrr+yw+L+ ++++ivlvhy+++
  Glyma.05G148300.3.p 103 NPTFQRRSYWMLDPAYDHIVLVHYRNT 129
                          *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.0949135IPR005559CG-1 DNA-binding domain
SMARTSM010766.8E-7912130IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-4915128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.109.8E-9417505IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.09E-17419503IPR014756Immunoglobulin E-set
PfamPF018331.5E-7419502IPR002909IPT domain
CDDcd001022.08E-4419504No hitNo description
Gene3DG3DSA:1.25.40.202.3E-16614709IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.539615707IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.79E-17617709IPR020683Ankyrin repeat-containing domain
CDDcd002045.12E-14620707No hitNo description
PfamPF127965.9E-8631709IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06648680IPR002110Ankyrin repeat
SMARTSM002480.0038648677IPR002110Ankyrin repeat
SMARTSM002482200687716IPR002110Ankyrin repeat
SMARTSM0001583765787IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51767795IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.14E-5816866IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.5819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712820849IPR000048IQ motif, EF-hand binding site
PfamPF006120.025822840IPR000048IQ motif, EF-hand binding site
SMARTSM000156.6E-5842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.34843868IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-5844864IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQFTQ EPPQQPTSGS LFLFNKRVLR  60
FFRKDGHNWR KKRDGRTVGE AHERLKVGNV EALNCYYAHG EQNPTFQRRS YWMLDPAYDH  120
IVLVHYRNTS EGKLSSGAGA QLSPSSSSVY TQSPSPYSTQ NPGSTSILGD SYEPNQSFSS  180
PGSTEVTSDM FVLNNKMGHM DGTDTESGTS PELEVTQALR RLEVQLSLNE DNFEDIVSFG  240
SKHETTHDSN PQHDQRVISN QEQSAAFSGP DDQGLFYDGY NGRQGDGGEF YHELIDHGYP  300
DGNEKALWTE VLESCKSSSA VKLPQKNVYM PVENLENSVS SARRVPVSNQ ENSHWLNFNT  360
AVFSQPQGVD EVKFPVYSSM VETQVINSDY YETLFDQSQI GAPPDANSSL TVAQKQKFTI  420
KTISPEWGYA TETTKVIVVG SLLCHPSDSA WACMFGDVEV PVEIIQDGVI SCEAPSHLPG  480
KVTLCITSGN RESCSEVREF EYRDKTNSCT QCTQSETEAT RSPEELLLLV RLEQMLLSAS  540
TIKNDNIESG IPLIKQKADD DSWSHIIEAL LVGSGTSTGT VDWLLEELLK DKLQQWLSCR  600
SQEKDEETGC SLSKKEQGII HMVAGLGFEW ALNPILTCGV NINFRDINGW TALHWAARFG  660
REKMVASLIA SGASAGAVTD PNAQDPTGKT AASIAAGNGH KGLAGYLSEI AVTSHLSSLT  720
LEESELSKSS AELQADMTVN SVSKENLTAS EDQASLKDTL AAIRNVTQAA ARIQSAFRSH  780
SFRKRRAREV AASAGGIGTI SEISAMSKLA FRNSREYNSA ASAALSIQKK YRGWKGRKDF  840
LALRKKVVKI QAHVRGYQVR KHYKVIWAVG ILDKVVLRWR RKGAGLRGFR QEMDINENEN  900
EDEDILKVFR KQKVDVEIEE AVSRVLSMVD SPDAREQYHR MLEKYRQAKA ELAGTSDEAS  960
LSTSVGDDLF IDDFYPFP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.132900.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G148300.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965370.0BT096537.1 Soybean clone JCVI-FLGm-10A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580123.10.0calmodulin-binding transcription activator 4 isoform X3
RefseqXP_028232710.10.0calmodulin-binding transcription activator 4-like isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0R0K5M70.0A0A0R0K5M7_SOYBN; Uncharacterized protein
STRINGGLYMA05G28090.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]