PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G106000.1.p | ||||||||
Common Name | GLYMA_05G106000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32357.4 Da PI: 10.2435 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 7e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Glyma.05G106000.1.p 5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.45 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.54E-16 | 6 | 57 | No hit | No description |
SMART | SM00526 | 3.4E-11 | 104 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.174 | 118 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.9E-14 | 124 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.07E-16 | 124 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.1E-9 | 127 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRNLPAPK IDNNHMALST IVRNDEVLDT KPIAVSGGPL QSPNLKEQIS 120 RLVDNHILEA IVNMKEQKGS DKVAIASFIE EKYRSPPNLS KLLSTKLKHM VASGKIVKEK 180 HKYRIAPSST VSEKRRCSSL VLLEEKPKDP SEVHKNDDVN ILSKSQIDAE ISKVKGLTAQ 240 EAAAAAAKAV AEAEAAIAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHIW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22770 | 0.0 | somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G106000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-123 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028232211.1 | 0.0 | telomere repeat-binding factor 2-like isoform X3 | ||||
Swissprot | Q9FJW5 | 1e-76 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A0R0JTK3 | 0.0 | A0A0R0JTK3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G22500.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 6e-72 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G106000.1.p |
Publications ? help Back to Top | |||
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