PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G095900.1.p
Common NameGLYMA_05G095900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 271aa    MW: 29645.8 Da    PI: 6.7797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.83.3e-28168722102
                          SSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  22 sengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                          se gn+fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+ll +ikr+k+
  Glyma.05G095900.1.p  16 SEGGNTFVVWKHADFANDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANEYFKRGQKDLLAEIKRRKT 87 
                          5789****************************************9999.........**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.7E-38885IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-271685IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-241685IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-221685IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-103446IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-104759IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSQQQRSMPA PFLTKSEGGN TFVVWKHADF ANDLLPKYFK HNNFSSFVRQ LNTYGFRKTV  60
PDKWEFANEY FKRGQKDLLA EIKRRKTVSS VSGKSGSGGN ISASHSGGDD MGSTSTGSME  120
AATATVTTTQ CADLSGENEK LKKDNEKLSD ELARTKKHCD DLVAFLRDSL NVGPDVIDCI  180
IRQGTCGSSN DDAVRFDATE NLNNHNHDDD ENAVGECEPE QPKGDNGESL KLFGVWLKGQ  240
NGKENSIGSC RKRGRQDPIA ATAKELKTLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-19128921109Heat shock factor protein 2
5d8l_B2e-19128921109Heat shock factor protein 2
5d8l_D2e-19128921109Heat shock factor protein 2
5d8l_F2e-19128921109Heat shock factor protein 2
5d8l_H2e-19128921109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.282630.0leaf| pod| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G095900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232114.10.0heat shock factor protein HSF24-like
SwissprotP223352e-70HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLK7KP870.0K7KP87_SOYBN; Uncharacterized protein
STRINGGLYMA05G20460.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-46heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]