PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G070200.1.p
Common NameGLYMA_05G070200, LOC100820385
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 572aa    MW: 63972.5 Da    PI: 6.7627
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G070200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27333386256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           +++WtpeLH+ Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Glyma.05G070200.1.p 333 IKVDWTPELHKTFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 386
                          5899****************.********************************96 PP
2Response_reg22.74.9e-09201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedal 87 
                          vl+ + +++ +  +r  le  +y +v ++ +  eal  +      +++ ++ ++ +    G+++l   ++++ +lp i+ + +   +++ 
  Glyma.05G070200.1.p  20 VLLLERDNISAAEIRAKLEAMDY-NVSTFCEENEALSAISSGLesFHIAIVEVSSSSgQGGFKFL---ENAK-DLPTIMTSNNHCLNTMM 104
                          567777788888899999*****.***************76654599999987776645566655...4555.899**9999999***** PP

                          HHHHTTESEEEESS--HHHHHH CS
         Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                          +++ +Ga +fl Kp ++++l++
  Glyma.05G070200.1.p 105 KCIALGAVEFLRKPLSEDKLRN 126
                          *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.2E-1516139No hitNo description
SuperFamilySSF521726.4E-1416138IPR011006CheY-like superfamily
SMARTSM004480.008218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.47819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.84E-821131No hitNo description
Gene3DG3DSA:1.10.10.604.2E-27329389IPR009057Homeodomain-like
PROSITE profilePS5129415.562329388IPR017930Myb domain
SuperFamilySSF466896.99E-18331389IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24332387IPR006447Myb domain, plants
PfamPF002491.4E-7335384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MVFSANDLQE WKDFPKGLKV LLLERDNISA AEIRAKLEAM DYNVSTFCEE NEALSAISSG  60
LESFHIAIVE VSSSSGQGGF KFLENAKDLP TIMTSNNHCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNARA SILSESLKPV KESVVSMLQL QTDDEQHESR VSRDIEKVSR  180
FVDNDHELSS GNDKYPAPST PQLRQGTRLL DDGDCQEQTN CSTGKESGEH EGESKSVETT  240
CGNLNAESTP QQRKSEITLV REEVESTPQQ RKSEITLVKE EVDIVDASKG ESVASPHTQK  300
RKVLSNTDRN TKALIKVGVH SDSCEIRGNQ KKIKVDWTPE LHKTFVKAVE QLGIDQAIPS  360
RILELMKVEG LTRHNVASHL QKYRMHKRQI LPKEERKWLN LRERSYCVKR PIMAFPPYHS  420
NHTLPLPPVY PMWGQSGSPT AGMQIWGSPG YPFWHTTAEN WHWKPFPGMH ADAWGCPVLP  480
LPPPQTPGFP YSQNMPSLLN ADAVDHTFTM PQSSFEHYPA EEVVDKVVKE AISKPWLPLP  540
LGLKPPSPDS VLAELSRQGI SNIPPKGSNS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16337386655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.80000.0root| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G070200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-106AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579672.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028231878.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A445KK760.0A0A445KK76_GLYSO; Two-component response regulator-like APRR2 isoform A
TrEMBLK7KNA70.0K7KNA7_SOYBN; Uncharacterized protein
STRINGGLYMA05G06070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-128ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]