PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 279aa MW: 31243.6 Da PI: 6.9709

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G063500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.8	8.6e-21	129	179	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.05G063500.1.p 129 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 179 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-32	128	188	IPR001471	AP2/ERF domain
CDD	cd00018	3.90E-32	128	187	No hit	No description
SMART	SM00380	2.4E-38	129	193	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-14	129	179	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.223	129	187	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-22	129	189	IPR016177	DNA-binding domain
PRINTS	PR00367	1.3E-13	130	141	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-13	169	189	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MANAAEVSAL KRIKLHLLGE LSPLATPQNK FDQTNPSPSE SSNSESSSIS LNHYFTDLLE 60 PEIEFPLFEF DSKPQVIDLE TPKTLISAEK KPQFNRKPSL LIAVPKKTEW IQFGNPEVAA 120 PENQPEKKHY RGVRQRPWGK FAAEIRDPNK RGSRVWLGTF DTAIEAAKAY DRAAFRLRGS 180 KAILNFPLEV NTAAETVSVA AVDVERKRRR EEEEVVVEDV KAVVKKEKIT EHDVSCFRGM 240 PLTPSMWTGF WDSDVKDIFN IPPLSPLSPF GFSPLVAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-33	128	193	4	69	ATERF1
3gcc_A	8e-33	128	193	4	69	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	209	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5293	0.0	cotyledon\| flower\| hypocotyl\| leaf\| meristem\| pod\| root\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G063500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031253	0.0	KT031253.1 Glycine max clone HN_CCL_99 AP2-EREBP transcription factor (Glyma05g05130.1_like1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003524068.1	0.0	ethylene-responsive transcription factor 5
Refseq	XP_028231815.1	0.0	ethylene-responsive transcription factor 5-like
Swissprot	O80341	3e-64	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A0R4J386	0.0	A0A0R4J386_SOYBN; Uncharacterized protein
TrEMBL	A0A445KKG8	0.0	A0A445KKG8_GLYSO; Ethylene-responsive transcription factor 5
STRING	GLYMA05G05130.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	3e-54	ethylene responsive element binding factor 5

Link Out ? help Back to Top
Phytozome	Glyma.05G063500.1.p
Entrez Gene	100800453

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]