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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.05G050600.1.p |
| Common Name | GLYMA_05G050600, LOC100803130 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
TALE |
| Protein Properties |
Length: 294aa MW: 33241.4 Da PI: 6.8334 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.05G050600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.5 | 9.7e-08 | 238 | 271 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
k +yp+++++++L +++gL+ +q+ +WF N+R +
Glyma.05G050600.1.p 238 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 271
469*****************************87 PP
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| 2 | ELK | 25.5 | 3e-09 | 192 | 213 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK +L++++++++ ++++E++
Glyma.05G050600.1.p 192 ELKIELKQGFKSRIEDVREEIL 213
9*******************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MQEAGLGMGM VSGEVSAAGD HHHHHRQVKA EIATHPLYEQ LLSAHVSCLR VATPIDQLPL 60
IDGQLSQSHH LLRSYASHHS HSLSPHDRQE LDNFMAQYLI VLCTFKEQLQ QHVRVHAVEA 120
VMACRDIEST LQALTGVSLG EGTGATMSDD EDDLQMDGSL DQSSAEGHDL MGFGPLLPTE 180
SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTSVLK AWWQQHAKWP 240
YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKRE YAH*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 268 | 288 | RKRNWHSNSQSVTSLKSKRKR |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: In roots, stems and cotyledons of one-week old seedlings. In mature plants, in young leaves from first level below flowers as well as in flower buds and open flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
| UniProt | Possible developmental regulator. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By wounding; up to 7-fold increase. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G62990.1 | 1e-166 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - He JB, et al.
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
J Integr Plant Biol, 2018. 60(6): p. 514-528
[PMID:29393579] - Boivin R,Hamel F,Beauseigle D,Bellemare G
Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
[PMID:7916213]
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