PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G050400.1.p
Common NameGLYMA_05G050400, LOC100797827
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 347aa    MW: 36459.9 Da    PI: 7.5624
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.63.8e-37701743105
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 
                          +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai+e+tgt++ +a ++             ss+s  
  Glyma.05G050400.1.p  70 PKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVsvggalkI--PTTSSNS-- 155
                          799************************************************************9999955554333221..1111111.. PP

                  TCP  86 ssgkaaksaakskksqksaa 105
                           +++aa++aa+s+k++k+++
  Glyma.05G050400.1.p 156 -NEEAAAAAASSNKKRKRPS 174
                          .1122222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-3074170IPR005333Transcription factor, TCP
PROSITE profilePS5136926.79275129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDQDDDEAGT TNLSTSDADV AEKETTNNLN GVPKQNNAFE ETTGFQVLPL KKEEPTYSDP  60
DTEIVPVKLP KRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVRWLLE  120
HAEPAIIEAT GTGTVPAIAV SVGGALKIPT TSSNSNEEAA AAAASSNKKR KRPSNSEFVD  180
INININDAVS KSSGLAPVHV PQGLVPVWAV SNPSMVIPAN TFWMIPQAAT TPNPSGGVAG  240
PASQQPQLWA LSPSVFNVAA RPISPLVTTN IPEARPVMTA CSNGSNSAVS TSTVGAKLAT  300
KSSMAPSVSS SGTKSGKTQM LRDFSLEICD KQELQLLGRS GTHAQS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.141070.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G050400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525544.10.0transcription factor TCP9
SwissprotO646471e-69TCP9_ARATH; Transcription factor TCP9
TrEMBLI1K0E30.0I1K0E3_SOYBN; Uncharacterized protein
STRINGGLYMA05G03610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-60TCP family protein