PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G031800.1.p | ||||||||
Common Name | GLYMA_05G031800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24692 Da PI: 9.5035 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.3e-09 | 109 | 156 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.05G031800.1.p 109 NHSLAERARREKISERMKILQDLVPGC----NKVIGKAFVLDEIINYVQSLQ 156 79************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-17 | 103 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.09E-9 | 103 | 160 | No hit | No description |
PROSITE profile | PS50888 | 15.135 | 105 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 105 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 109 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-9 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEPLLFNDST FSSANPSLSE IWPSHFPSDH TPRKRRLSPS SDSASNKHIK LSAPESQDQN 60 GALKVGEVDA TSVAGNKLPQ QTPKPSSSEQ APKQDYIHVR ARRGQATDNH SLAERARREK 120 ISERMKILQD LVPGCNKVIG KAFVLDEIIN YVQSLQRQVE FLSMKLEAVS SRLSMKPTLE 180 CFPSKEVCTQ AGIIFGSQPA KGYAQGSQMG WLHMQIAGGF EKAT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25514 | 0.0 | cotyledon| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G031800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097647 | 0.0 | BT097647.1 Soybean clone JCVI-FLGm-22I4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028231446.1 | 1e-167 | transcription factor BHLH094-like isoform X1 | ||||
Swissprot | Q69WS3 | 3e-62 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A445KIM2 | 1e-166 | A0A445KIM2_GLYSO; Transcription factor BHLH094 isoform A | ||||
TrEMBL | I1JZU4 | 1e-166 | I1JZU4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G01590.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 9e-66 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G031800.1.p |