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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G027000.1.p | ||||||||
Common Name | GLYMA_05G027000, LOC100799402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35348.1 Da PI: 7.625 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W++++ g+ R+ k+c++rw +yl Glyma.05G027000.1.p 14 KGPWTPEEDIILVSYIQEQGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Glyma.05G027000.1.p 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.437 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.35E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.904 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EQGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKQSG 120 SDEGVDQEGH SSSSSSNSHP KGQWERRLQT DIQMAKKALC DALSLHKPAT ATATNLVVPD 180 DATKPSSTSH QPYKHASSSY ASSYENISRL MENWMKSPNS NSTNNSPGYY SSSFSNMVNN 240 NTTTGSSSSE GAHSNTTTTT QDQGFDSLLT LNSSKHHGSS SQTQVPLTLL ENWLFDDGAA 300 QCHEDLMNMS LEESTAGLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G027000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ937783 | 1e-122 | KJ937783.1 Caragana korshinskii MYBJ2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524812.1 | 0.0 | myb-related protein 306 | ||||
Refseq | XP_028231385.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-117 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A445KJE0 | 0.0 | A0A445KJE0_GLYSO; Myb-related protein 306 | ||||
TrEMBL | I1JZP7 | 0.0 | I1JZP7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G01080.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-104 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G027000.1.p |
Entrez Gene | 100799402 |
Publications ? help Back to Top | |||
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