PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G025700.1.p | ||||||||
Common Name | GLYMA_05G025700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 339aa MW: 38411.5 Da PI: 6.7182 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.4e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gi+KKA+ELS+LCd++v +++fs+tgk Glyma.05G025700.1.p 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGK 53 57899*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.025 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.81E-25 | 2 | 84 | No hit | No description |
PRINTS | PR00404 | 1.2E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-19 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDVVLLMFSP TGKPTLLQGE 60 RSNIEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTMEELSYQ 120 VKVLQAQITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVGLQKLQ EGMALPSMIA 180 SLQDSQPLSW LLNDDNHHLM LPNEPKFQSF SDNTNRDVEC STDISLPNYS GYIGSNKFEV 240 GSSPQVTTLG QGGGAMNELN GTTFLNVQCC DQFAYPPPPD IEEVKQFPTM DNKSNTVDYQ 300 VHNNFDLPRS LFENGHQFWN SASGSCGIAM FNENNYHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 1e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 1e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 1e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G025700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235246 | 1e-149 | AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028209319.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X4 | ||||
Swissprot | Q7X9I0 | 5e-82 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A0R0JXK1 | 0.0 | A0A0R0JXK1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G10941.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 | Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-84 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G025700.1.p |
Publications ? help Back to Top | |||
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