PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G008000.2.p

Common Name

GLYMA_05G008000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 520aa MW: 58941.1 Da PI: 7.3512

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G008000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	81	104	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ff+ G C+ GdrC+F Hgp Glyma.05G008000.2.p 81 MVPCYFFFN-GSCNKGDRCSFLHGP 104 689****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.3E-4	78	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.403	78	105	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-6	78	103	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	81	104	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-6	83	106	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MRLRGLTLGI AGTGYLANAL IQPVLLDTLI ATWRKLACNS SQLKHCGCSH AIKSSGPLDG 60 HTGASVPSEP TQTSLPANKT MVPCYFFFNG SCNKGDRCSF LHGPDDSIFT VKPVKNDNGS 120 TDALNLENKT SSGNRIGLVS TPTDQSVAAP KNLSDLKLQP KEDHQLEIPK DVKQQGYYLE 180 LSASEYKEAA VSRSDSSIPD DGFVHNVPHL CTEQSSEEQV NSHIEPEERW ESSPHSPGFD 240 VLVHDEVDNL GYEEDSEYVT VGDRDEQELD DQYFGYEFKD SVEYDTICPE ADILYEQETY 300 DGYRFLDRGL IHANGRTIHA YPRDVFLDPR LSRKRIRMSA EMAAYDKNLD LRDHLRRRRE 360 IKGPPVSNFL RRESSPLMIR KQERHQRHGI EQRPIRRLTS QLGYSAIDSI GEVGTLSVAN 420 KHRLFRHSQA QQHKPRKHYR EKLPKRQFLS SKISRKPAFK QRGFIHEFSA FSGPKTLAEI 480 KEEKMKKAEG SLHWKSTSTD FQDPKPLSEI LKDKRTMDQ*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MRLRGLTLGI AGTGYLANAL IQPVLLDTLI ATWRKLACNS SQLKHCGCSH AIKSSGPLDG  60
HTGASVPSEP TQTSLPANKT MVPCYFFFNG SCNKGDRCSF LHGPDDSIFT VKPVKNDNGS  120
TDALNLENKT SSGNRIGLVS TPTDQSVAAP KNLSDLKLQP KEDHQLEIPK DVKQQGYYLE  180
LSASEYKEAA VSRSDSSIPD DGFVHNVPHL CTEQSSEEQV NSHIEPEERW ESSPHSPGFD  240
VLVHDEVDNL GYEEDSEYVT VGDRDEQELD DQYFGYEFKD SVEYDTICPE ADILYEQETY  300
DGYRFLDRGL IHANGRTIHA YPRDVFLDPR LSRKRIRMSA EMAAYDKNLD LRDHLRRRRE  360
IKGPPVSNFL RRESSPLMIR KQERHQRHGI EQRPIRRLTS QLGYSAIDSI GEVGTLSVAN  420
KHRLFRHSQA QQHKPRKHYR EKLPKRQFLS SKISRKPAFK QRGFIHEFSA FSGPKTLAEI  480
KEEKMKKAEG SLHWKSTSTD FQDPKPLSEI LKDKRTMDQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G008000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003525663.1	0.0	zinc finger CCCH domain-containing protein 34
Refseq	XP_028231142.1	0.0	zinc finger CCCH domain-containing protein 34-like
TrEMBL	A0A0R0JP67	0.0	A0A0R0JP67_SOYBN; Uncharacterized protein
STRING	GLYMA05G08496.1	0.0	(Glycine max)

Link Out ? help Back to Top
Phytozome	Glyma.05G008000.2.p