PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G008000.1.p
Common NameGLYMA_05G008000, LOC100813826
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 525aa    MW: 60233.3 Da    PI: 6.8796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G008000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-0786109327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ff+  G C+ GdrC+F Hgp
  Glyma.05G008000.1.p  86 MVPCYFFFN-GSCNKGDRCSFLHGP 109
                          689******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.164635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0065634IPR000571Zinc finger, CCCH-type
PfamPF156632.9E-11862No hitNo description
PROSITE profilePS5010310.5023763IPR000571Zinc finger, CCCH-type
SMARTSM003560.433962IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-483109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-683108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.40383110IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-586109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-688111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDQDSLKRYT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWLSGQ CLNPTCAFRH  60
PPLDGHTGAS VPSEPTQTSL PANKTMVPCY FFFNGSCNKG DRCSFLHGPD DSIFTVKPVK  120
NDNGSTDALN LENKTSSGNR IGLVSTPTDQ SVAAPKNLSD LKLQPKEDHQ LEIPKDVKQQ  180
GYYLELSASE YKEAAVSRSD SSIPDDGFVH NVPHLCTEQS SEEQVNSHIE PEERWESSPH  240
SPGFDVLVHD EVDNLGYEED SEYVTVGDRD EQELDDQYFG YEFKDSVEYD TICPEADILY  300
EQETYDGYRF LDRGLIHANG RTIHAYPRDV FLDPRLSRKR IRMSAEMAAY DKNLDLRDHL  360
RRRREIKGPP VSNFLRRESS PLMIRKQERH QRHGIEQRPI RRLTSQLGYS AIDSIGEVGT  420
LSVANKHRLF RHSQAQQHKP RKHYREKLPK RQFLSSKISR KPAFKQRGFI HEFSAFSGPK  480
TLAEIKEEKM KKAEGSLHWK STSTDFQDPK PLSEILKDKR TMDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G008000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525663.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_028231142.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A445KI250.0A0A445KI25_GLYSO; Zinc finger CCCH domain-containing protein 34 isoform A
TrEMBLK7KNK60.0K7KNK6_SOYBN; Uncharacterized protein
STRINGGLYMA05G08496.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823
Representative plantOGRP24551220