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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G004400.2.p | ||||||||
Common Name | GLYMA_05G004400, LOC100788656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16344.1 Da PI: 6.3837 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.6 | 2.6e-35 | 2 | 87 | 14 | 99 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ Glyma.05G004400.2.p 2 PDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNA 87 79*******************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.253 | 1 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-34 | 2 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MPDCIFAPYF PPEEPHKFAN VHKIFGASNV SKLLNEVQPH QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQKQVLRLQK ELDATNADLI RYSACNEIPN TTTHHGGRRM SDDGGGGGSS 120 LAHSHGFYYP SNWNNDPCGN SNGYPRGDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-53 | 1 | 98 | 23 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-53 | 1 | 98 | 23 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G004400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-100 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579776.1 | 1e-110 | LOB domain-containing protein 25 | ||||
Refseq | XP_014630864.1 | 1e-110 | LOB domain-containing protein 25 | ||||
Refseq | XP_028231096.1 | 1e-110 | LOB domain-containing protein 25-like | ||||
Refseq | XP_028231097.1 | 1e-110 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 1e-57 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A445KHB7 | 1e-108 | A0A445KHB7_GLYSO; LOB domain-containing protein 25 isoform A | ||||
TrEMBL | K7KNN7 | 1e-108 | K7KNN7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G08870.2 | 1e-109 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-58 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G004400.2.p |
Entrez Gene | 100788656 |
Publications ? help Back to Top | |||
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