PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G257000.1.p
Common NameGLYMA_04G257000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 813aa    MW: 91347.7 Da    PI: 10.2021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G257000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15556649199
                          EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k+ +ps  ++++++ ++p +f++++g +   s   t++ ++gr+W+++l  +k+++ + +++ W+eFv+   L  g  +vF+++g+s+
  Glyma.04G257000.1.p 556 FLKIILPSPIHANQMMqRIPEEFIKRFGDE--LSNVATVTVPDGRVWKMRL--KKCGKDVSFRSKWREFVEYYSLGYGSYLVFRYEGNSK 641
                          789999999999987779******999865..88899**************..**********************************999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f++
  Glyma.04G257000.1.p 642 F--RVLIFDT 649
                          9..9999986 PP
2B350.53.8e-167207921588
                          -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                          rl++  +f ++h +++ +   ++l++ +g++W+v +   + + g+++lt+GW++Fv++n+L egD +v++l+++  
  Glyma.04G257000.1.p 720 RLYVRSHFSKKHLKPNVC---MMLQNCNGEQWDVSCVChNTRYGGMMLTRGWRKFVRDNDLSEGDPCVLELIETnP 792
                          688888999999656445...***************554777778*************************998633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF034675.0E-528170IPR005120Regulator of nonsense-mediated decay, UPF3
Gene3DG3DSA:3.30.70.3304.6E-339101IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549289.07E-251099IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd124551.20E-351196No hitNo description
Gene3DG3DSA:2.40.330.102.4E-22548649IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-22549649IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-19554648No hitNo description
PfamPF023627.4E-13556649IPR003340B3 DNA binding domain
SMARTSM010194.1E-16556650IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661557650IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16705800IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16707796IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-9711804IPR003340B3 DNA binding domain
CDDcd100171.37E-15719791No hitNo description
PfamPF023623.1E-14720792IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884738804IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MKVRSEREKT KVVIRHLPPS LTQSDLFQHI DSHFASRYNW FSFRPGNNSH KRQRHSRAYI  60
DFKCPDDVFE FAEFFDGHVF VNERGAQHKV IVEYAPSQRV PKPSAKKDGR EGTIFKDPDY  120
LEFLKLIAKP QEHLPSAEIQ LERKESEQVG ASKETPIVTP LMEYIRQKRA VDSGMQASSA  180
VAKVCRRSRA ALPGKPGSGN IKRGSEKKKY VQKDNAKSAT RKESKNMSAF IVVPRRDDQF  240
AESSIKGISD IKTLHGVEGS ISGIPLTSES GKKKFLLLKG KQQDIPSATE ATVKQQNVQS  300
GNSPISTPAK QNQRREASGR LIRSILLNNE ARQSQSTTGT QHKIQILSSE NGQRPSRRFG  360
SRSGLNNQVS NHDAAQINSE GDSRRALDEK FIKRDLHGLG SSAKTEKRTR NKDRPDRGVW  420
TPLRRSDVSH AGNDYSSSSL AQPTQSNPES AEGEVKENVP SGNRGGEFSA SAGGHGGNPS  480
IENGSQRNFI HHGASYVVKD DGAVSSISKG KPSKKSVGHS AHESRESRIP MQPRQSRRNY  540
VEGSDLAESE SNSKHFLKII LPSPIHANQM MQRIPEEFIK RFGDELSNVA TVTVPDGRVW  600
KMRLKKCGKD VSFRSKWREF VEYYSLGYGS YLVFRYEGNS KFRVLIFDTT SAEICYPDLD  660
NRKRSKVDDQ TRKKEHKEAI DEDDVNLKAW KKESDCSEIA KDASTKPKHP SVTCTIQPYR  720
LYVRSHFSKK HLKPNVCMML QNCNGEQWDV SCVCHNTRYG GMMLTRGWRK FVRDNDLSEG  780
DPCVLELIET NPAVVLKLTV LGAPEYHSSR PH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1uw4_A5e-151099289UPF3X
1uw4_C5e-151099289UPF3X
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1661673RKRSKVDDQTRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.197060.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G257000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946130.0BT094613.1 Soybean clone JCVI-FLGm-18N4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579004.10.0regulator of nonsense transcripts UPF3-like isoform X1
RefseqXP_006579006.10.0regulator of nonsense transcripts UPF3-like isoform X1
RefseqXP_014630501.10.0regulator of nonsense transcripts UPF3-like isoform X1
RefseqXP_014630502.10.0regulator of nonsense transcripts UPF3-like isoform X1
TrEMBLA0A0R0KCT00.0A0A0R0KCT0_SOYBN; Uncharacterized protein
STRINGGLYMA04G43630.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-23B3 family protein