PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G254200.1.p
Common NameGLYMA_04G254200, LOC102662128
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 563aa    MW: 61209.9 Da    PI: 5.5206
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G254200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.3e-24123224199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvlt sd+++ g +++p+ +a+++         ++ +   l ++d +g +We+++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF+
  Glyma.04G254200.1.p 123 FSKVLTASDANNGGGFSVPRFCADSIfpplnfqADPPVQ--NLLVTDVHGFVWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDVVVFM 210
                          88*********************999*****96555555..6999********************************************* PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++s++ l+v+++r+
  Glyma.04G254200.1.p 211 --KNSGGGLFVGIRRA 224
                          ..779999******97 PP
2Auxin_resp87.72.2e-29278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+ +++FevvY+P+  +seFvvk+e v++a+kv +s+G R+k+a et+dss+ ++ +Gtv++v    + +W++S Wr+L+
  Glyma.04G254200.1.p 278 AAELAARNMPFEVVYYPKERWSEFVVKTEAVNEAMKVAWSPGIRVKIAAETDDSSRVSWcQGTVSSVALHGNGQWRGSLWRMLQ 361
                          688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-29114228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-34114226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-20122223No hitNo description
PfamPF023628.7E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506123225IPR003340B3 DNA binding domain
SMARTSM010198.5E-19123225IPR003340B3 DNA binding domain
PfamPF065071.0E-26278361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MPRQPPPSPP SQPGVLDPAL WLVCAGTTVE IPTLHSRVYY FPQGHFDQAS SAPRNLSPLL  60
LSKPAVLCRV ESVQFLADPL TDEVFAKLIL HPVADCFASG PSAVAPAAAS ASAQTGENNV  120
VSFSKVLTAS DANNGGGFSV PRFCADSIFP PLNFQADPPV QNLLVTDVHG FVWEFRHIYR  180
GTPRRHLLTT GWSTFVNNKK LVAGDVVVFM KNSGGGLFVG IRRATRFSMG KGGDRGGMRI  240
RVDEEEEEEE EEEEEEEVRE VFSRDGRGKL SAKVVAEAAE LAARNMPFEV VYYPKERWSE  300
FVVKTEAVNE AMKVAWSPGI RVKIAAETDD SSRVSWCQGT VSSVALHGNG QWRGSLWRML  360
QVTWDEPEGL QIAKWVSPWQ VELVSTTPAL HSAFPPIKRI KAAHDSGVFT NGERDPFPMT  420
GFTNSTMGQL NQALLSYGTF PAGMQGARHD AFSASRFCNY PTDMSRLCMG NSFGKSTFPW  480
LKTLETEVNV GSSQSDELSP DSRGSLQSCG TDLVGNSRKL GSVSFQLFGA VIQTEQPVEN  540
GLQGTGCTCT GDECQCQRAL NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-641438213353Auxin response factor 1
4ldy_B1e-641438213353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.81210.0cotyledon| flower| hypocotyl| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G254200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578990.10.0auxin response factor 17
TrEMBLI1JZB40.0I1JZB4_SOYBN; Auxin response factor
STRINGGLYMA04G43350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Representative plantOGRP1509234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-153auxin response factor 17