PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G233300.4.p

Common Name

GLYMA_04G233300, LOC778114

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 282aa MW: 30593 Da PI: 8.8888

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G233300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	23	82	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.04G233300.4.p 23 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 82 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	19	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-34	24	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEGSKPPPPP PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP RYFCKTCRRY 60 WTEGGSLRNV PVGGGSRKNK RSTPPAPPSA PAPTKKLSDL ATPNFPQSAS QDPKIHQGQD 120 LNLAYPPAED YSTVSKFIEV PYSTELDKGT TGLHQNPTSS STTTSASSQL SAMELLKTGI 180 AAASSRGLNS FMPMYNSTHG FPLQDFKPPH GLNFSLEGFE NGYGGLQGIQ EGPTGGARIL 240 FPTVEDLKQQ VPSTNEFDQQ NRSQEGSAHG YWNGMLGGGS W*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4766	0.0	meristem\| root\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G233300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857271	0.0	DQ857271.1 Glycine max Dof21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236777.1	0.0	Dof21
Refseq	XP_006577879.1	0.0	dof21 isoform X1
Refseq	XP_014629855.1	0.0	dof21 isoform X1
Refseq	XP_028229943.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
Refseq	XP_028229944.1	0.0	dof zinc finger protein DOF4.6-like isoform X2
Refseq	XP_028229946.1	0.0	dof zinc finger protein DOF4.6-like isoform X2
TrEMBL	A0A0B2QID3	0.0	A0A0B2QID3_GLYSO; Dof zinc finger protein DOF4.6
TrEMBL	A0A445L443	0.0	A0A445L443_GLYSO; Dof zinc finger protein DOF4.6 isoform A
TrEMBL	I1JYN9	0.0	I1JYN9_SOYBN; Uncharacterized protein
TrEMBL	Q0GLD1	0.0	Q0GLD1_SOYBN; Dof21
STRING	GLYMA04G41170.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G233300.4.p
Entrez Gene	778114