PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G233300.3.p | ||||||||
Common Name | GLYMA_04G233300, LOC778114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 282aa MW: 30593 Da PI: 8.8888 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.3e-39 | 23 | 82 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.04G233300.3.p 23 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 82 7899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 19 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-34 | 24 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEGSKPPPPP PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP RYFCKTCRRY 60 WTEGGSLRNV PVGGGSRKNK RSTPPAPPSA PAPTKKLSDL ATPNFPQSAS QDPKIHQGQD 120 LNLAYPPAED YSTVSKFIEV PYSTELDKGT TGLHQNPTSS STTTSASSQL SAMELLKTGI 180 AAASSRGLNS FMPMYNSTHG FPLQDFKPPH GLNFSLEGFE NGYGGLQGIQ EGPTGGARIL 240 FPTVEDLKQQ VPSTNEFDQQ NRSQEGSAHG YWNGMLGGGS W* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4766 | 0.0 | meristem| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G233300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857271 | 0.0 | DQ857271.1 Glycine max Dof21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236777.1 | 0.0 | Dof21 | ||||
Refseq | XP_006577879.1 | 0.0 | dof21 isoform X1 | ||||
Refseq | XP_014629855.1 | 0.0 | dof21 isoform X1 | ||||
Refseq | XP_028229943.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_028229944.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Refseq | XP_028229946.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
TrEMBL | A0A0B2QID3 | 0.0 | A0A0B2QID3_GLYSO; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A445L443 | 0.0 | A0A445L443_GLYSO; Dof zinc finger protein DOF4.6 isoform A | ||||
TrEMBL | I1JYN9 | 0.0 | I1JYN9_SOYBN; Uncharacterized protein | ||||
TrEMBL | Q0GLD1 | 0.0 | Q0GLD1_SOYBN; Dof21 | ||||
STRING | GLYMA04G41170.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-49 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G233300.3.p |
Entrez Gene | 778114 |