PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G226700.2.p

Common Name

GLYMA_04G226700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 540aa MW: 59839.8 Da PI: 5.6537

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G226700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	83.9	3.1e-26	22	84	64	127
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 d+ky++g+r nrat++gyWkatgkd++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Glyma.04G226700.2.p 22 PDRKYPNGHRLNRATNNGYWKATGKDRKIKS-GTILIGMKKTLVFYTGRAPKGNRTNWVMHEYR 84 589**************************.99***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.534	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-32	22	108	IPR003441	NAC domain
Pfam	PF02365	9.7E-12	32	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MVARFGLSEK LMSANGSLGT CPDRKYPNGH RLNRATNNGY WKATGKDRKI KSGTILIGMK 60 KTLVFYTGRA PKGNRTNWVM HEYRPTLKEL DGTNPGQNPY VLCRLFKKHD ESLEVSHCDE 120 AEPTASTPVA AYYSTEEIQS DLAVVAGSPS QVTEDDKHQS MIPAHSEEAI SNVVTPVDRR 180 TDGYDACDAQ NQIELPTAEE FQPLNFDIYY DPRSELLDGK LFSPVLAHIQ PEFHYQANIE 240 SDGRYGLQYG TNETNMSDFL NSVVNWDQVP FEDPNCQQQS YPLFNVKDNI LNSDLDSELA 300 NMTCMQAGYA EGAIDGRIPL LITSEFCSTT GIPVDCVGDE QKSNVGLFQN NSQRAFTDVN 360 MGQVYNVVDD YEQQRICSAV ASGNTGIIRR HREVRNEQLS INSTQGTAQR RIRLSMATHG 420 SNKTVKSESC AQEELYAKPV IAVGEKGSEN HASDESATLT NDGNELQKTP ESTGKRKISQ 480 QVTKAGSTLG LKDLFLLRRV PHISKASSNR TKCSSVFVLS AFVMVSLVVF TDIWGYLKF*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MVARFGLSEK LMSANGSLGT CPDRKYPNGH RLNRATNNGY WKATGKDRKI KSGTILIGMK  60
KTLVFYTGRA PKGNRTNWVM HEYRPTLKEL DGTNPGQNPY VLCRLFKKHD ESLEVSHCDE  120
AEPTASTPVA AYYSTEEIQS DLAVVAGSPS QVTEDDKHQS MIPAHSEEAI SNVVTPVDRR  180
TDGYDACDAQ NQIELPTAEE FQPLNFDIYY DPRSELLDGK LFSPVLAHIQ PEFHYQANIE  240
SDGRYGLQYG TNETNMSDFL NSVVNWDQVP FEDPNCQQQS YPLFNVKDNI LNSDLDSELA  300
NMTCMQAGYA EGAIDGRIPL LITSEFCSTT GIPVDCVGDE QKSNVGLFQN NSQRAFTDVN  360
MGQVYNVVDD YEQQRICSAV ASGNTGIIRR HREVRNEQLS INSTQGTAQR RIRLSMATHG  420
SNKTVKSESC AQEELYAKPV IAVGEKGSEN HASDESATLT NDGNELQKTP ESTGKRKISQ  480
QVTKAGSTLG LKDLFLLRRV PHISKASSNR TKCSSVFVLS AFVMVSLVVF TDIWGYLKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-23	23	112	80	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-23	23	112	80	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-23	23	112	80	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-23	23	112	80	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-23	23	112	83	172	NAC domain-containing protein 19
3swm_B	2e-23	23	112	83	172	NAC domain-containing protein 19
3swm_C	2e-23	23	112	83	172	NAC domain-containing protein 19
3swm_D	2e-23	23	112	83	172	NAC domain-containing protein 19
3swp_A	2e-23	23	112	83	172	NAC domain-containing protein 19
3swp_B	2e-23	23	112	83	172	NAC domain-containing protein 19
3swp_C	2e-23	23	112	83	172	NAC domain-containing protein 19
3swp_D	2e-23	23	112	83	172	NAC domain-containing protein 19
4dul_A	2e-23	23	112	80	169	NAC domain-containing protein 19
4dul_B	2e-23	23	112	80	169	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55111	0.0	flower\| hypocotyl\| leaf\| pod\| root\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G226700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098432	0.0	BT098432.1 Soybean clone JCVI-FLGm-23K19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001276211.2	0.0	NAC transcription factor
TrEMBL	A0A0R0KKN2	0.0	A0A0R0KKN2_SOYBN; Uncharacterized protein
STRING	GLYMA04G40450.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	6e-51	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Glyma.04G226700.2.p