PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G223200.1.p
Common NameGLYMA_04G223200, LOC100792150
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 338aa    MW: 37347.5 Da    PI: 6.5128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G223200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29172232259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqKe+ gs++prsYYrCt++   +C++kk+v+r +++p+++e+tY+g+H+++
  Glyma.04G223200.1.p 172 EDGYTWRKYGQKEILGSKYPRSYYRCTHQklyECQAKKQVQRLDHNPNIFEVTYRGNHTCH 232
                          7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28166233IPR003657WRKY domain
SuperFamilySSF1182907.85E-26168233IPR003657WRKY domain
SMARTSM007745.8E-38171233IPR003657WRKY domain
PfamPF031062.5E-26172232IPR003657WRKY domain
PROSITE profilePS5081121.023172234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEVINSIRR ACVLAQNLEQ DLPNLANQPA MLSLSIDQIT EAFSGAKEKM LLFSRQNQTS  60
DESPPTLVHE TTTQQSQMDA SLMQEWLRSS HALTMDQLFQ MHQFHAARST LQQIGEMGGK  120
DGEDSERNKG SEGEVQGIHA SPSRPRKREA NQEKRKVMVP APQFGNTEVP PEDGYTWRKY  180
GQKEILGSKY PRSYYRCTHQ KLYECQAKKQ VQRLDHNPNI FEVTYRGNHT CHMSSTAPSS  240
VPPQQLLVDI SQNNSSTISS QLSPTMNLSL HPGGGGAASS GSGGASTSRY GGDYPVVDMA  300
DAMFNSGSSS GNNSMEFLFS PAEIKVIQKL NRTRDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18172231968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G223200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578845.10.0WRKY transcription factor 55 isoform X3
RefseqXP_028229810.10.0WRKY transcription factor 55-like isoform X3
TrEMBLA0A445L4270.0A0A445L427_GLYSO; WRKY transcription factor 55
TrEMBLK7KLN80.0K7KLN8_SOYBN; Uncharacterized protein
STRINGGLYMA04G40121.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-55WRKY DNA-binding protein 55