PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G223200.1.p | ||||||||
Common Name | GLYMA_04G223200, LOC100792150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 338aa MW: 37347.5 Da PI: 6.5128 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.7e-29 | 172 | 232 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqKe+ gs++prsYYrCt++ +C++kk+v+r +++p+++e+tY+g+H+++ Glyma.04G223200.1.p 172 EDGYTWRKYGQKEILGSKYPRSYYRCTHQklyECQAKKQVQRLDHNPNIFEVTYRGNHTCH 232 7****************************9999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-28 | 166 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-26 | 168 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-38 | 171 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 172 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.023 | 172 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEEVINSIRR ACVLAQNLEQ DLPNLANQPA MLSLSIDQIT EAFSGAKEKM LLFSRQNQTS 60 DESPPTLVHE TTTQQSQMDA SLMQEWLRSS HALTMDQLFQ MHQFHAARST LQQIGEMGGK 120 DGEDSERNKG SEGEVQGIHA SPSRPRKREA NQEKRKVMVP APQFGNTEVP PEDGYTWRKY 180 GQKEILGSKY PRSYYRCTHQ KLYECQAKKQ VQRLDHNPNI FEVTYRGNHT CHMSSTAPSS 240 VPPQQLLVDI SQNNSSTISS QLSPTMNLSL HPGGGGAASS GSGGASTSRY GGDYPVVDMA 300 DAMFNSGSSS GNNSMEFLFS PAEIKVIQKL NRTRDED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-18 | 172 | 231 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G223200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578845.1 | 0.0 | WRKY transcription factor 55 isoform X3 | ||||
Refseq | XP_028229810.1 | 0.0 | WRKY transcription factor 55-like isoform X3 | ||||
TrEMBL | A0A445L427 | 0.0 | A0A445L427_GLYSO; WRKY transcription factor 55 | ||||
TrEMBL | K7KLN8 | 0.0 | K7KLN8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G40121.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 7e-55 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G223200.1.p |
Entrez Gene | 100792150 |