PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G222700.1.p
Common NameGLYMA_04G222700, LOC102659582
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 279aa    MW: 30389.8 Da    PI: 8.7997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G222700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056890123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C++ Fs++  L  H++ H
  Glyma.04G222700.1.p 68 FSCNYCKREFSTSQALGGHQNAH 90
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-66595No hitNo description
Gene3DG3DSA:3.30.160.602.1E-46694IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.1E-66892IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7186895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKISKNKGLK PEQEKASNSN NGVLMDFMKL SKDDKAQEQP SSKVVVDSSL CDSKGADDEK  60
NTKEAKTFSC NYCKREFSTS QALGGHQNAH KQERALAKCA QGFDVGGFGH FPYYPYPSFY  120
NSHSPYGGSF NRALGVQTDS MIHKHPWTPR YGHSWLKQDR VTIPNSSIFD GFEIVKGYYP  180
IMKSDGTLTL RQENGNGNAN VGTLSLFANY ATNSSSQVIN SDGNANVGTL SLFANAATTP  240
SSQLGHRAIL ATKKIDDYSM PEETSKGVSS NLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G222700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579328.10.0uncharacterized protein LOC102659582
RefseqXP_028230607.10.0uncharacterized protein LOC114410903
TrEMBLA0A0R0KBS10.0A0A0R0KBS1_SOYBN; Uncharacterized protein
TrEMBLA0A445L3R30.0A0A445L3R3_GLYSO; Zinc finger protein 3
STRINGGLYMA06G14783.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-15C2H2 family protein