PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 282aa MW: 30850.4 Da PI: 10.0135

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G217400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.4	2.3e-20	135	184	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae Aa+a+++a+++++g Glyma.04G217400.1.p 135 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRG 184 8******.******66.....56**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.6E-33	134	193	IPR001471	AP2/ERF domain
CDD	cd00018	1.40E-23	135	194	No hit	No description
SMART	SM00380	5.2E-37	135	198	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.659	135	192	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	135	193	IPR016177	DNA-binding domain
Pfam	PF00847	5.7E-14	135	184	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.8E-12	136	147	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.8E-12	158	174	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MMNNPALLSR LFPGINRERE MSAMVSALTH VVSGEVPTGD SSSVLHHQPH DDDAVTVKPN 60 MPSTTPFSST YVVATSSLKR SRQHDTYTPS FSHPPSSFPA MPTSAECSKS GMGNAVYEYR 120 TRGTENVKKE EGRRKYRGVR QRPWGKWAAE IRDPFKAARV WLGTFETAEA AARAYDEAAL 180 RFRGSKAKLN FPENVTLRQP QFTVSTSTDP FQLSGTNLYD HRMFLTSNTM ASHHLQSSLP 240 LPPATSSSLT SPPQNITSLS SLYSAQLPPW SASGHSSSSS P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-24	134	195	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	6e-24	134	195	4	66	ATERF1
3gcc_A	6e-24	134	195	4	66	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27261	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G217400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031077	0.0	KT031077.1 Glycine max clone HN_CCL_100 AP2-EREBP transcription factor (Glyma04g39510.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523249.1	0.0	ethylene-responsive transcription factor ABR1
TrEMBL	A0A0K2CTB3	0.0	A0A0K2CTB3_SOYBN; AP2-EREBP transcription factor (Fragment)
STRING	GLYMA04G39510.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4933	32	54
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43160.1	1e-26	related to AP2 6

Link Out ? help Back to Top
Phytozome	Glyma.04G217400.1.p
Entrez Gene	100793215

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]