PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 292aa MW: 33654.1 Da PI: 6.8778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G208300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL++k++g+++ + vikevd+yk++Pw+Lp+ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk Glyma.04G208300.1.p 7 LPPGFRFHPTDEELVNHYLCRKCAGQPIAV-PVIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADK 95 79************************99.89***********54445789****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Glyma.04G208300.1.p 96 PIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 98..778***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	60.593	7	159	IPR003441	NAC domain
Pfam	PF02365	4.0E-28	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MKGELELPPG FRFHPTDEEL VNHYLCRKCA GQPIAVPVIK EVDLYKFDPW QLPEIGFYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KALGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KKNNNLRLDD WVLCRIYNKK GKIEKYNTGA AKMNVEMVHS 180 FEHENETKPE IHKLGNEQLY METSDSVPRL NTDSSSSEHV VSPDVTCERE VQSDPKWNDD 240 LDLKLENAFD FQFNYLDDNN LSVDDYLFGT VQYQMGQLSP LQDMFMYLQK M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-85	2	165	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27062	0.0	epicotyl\| flower\| hypocotyl\| leaf\| root\| somatic embryo\| stem\| vegetative bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G208300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031208	0.0	KT031208.1 Glycine max clone HN_CCL_154 NAC transcription factor (Glyma04g38560.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341065.1	0.0	NAC transcription factor
Refseq	XP_028229601.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-122	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A0K2CTE5	0.0	A0A0K2CTE5_SOYBN; NAC transcription factor (Fragment)
TrEMBL	A0A445L3E0	0.0	A0A445L3E0_GLYSO; NAC domain-containing protein 2
STRING	GLYMA04G38560.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-124	NAC family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G208300.1.p
Entrez Gene	100814504

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]