PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G205100.2.p
Common NameGLYMA_04G205100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 291aa    MW: 32525.3 Da    PI: 8.3805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G205100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-081449148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l++++k++G            + R++k+c++rw +yl
  Glyma.04G205100.2.p 14 KGAWTKEEDERLINYIKLHG------------LLRCGKSCRLRWINYL 49
                         79******************............479***********97 PP
2Myb_DNA-binding60.53.6e-195599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Glyma.04G205100.2.p 55 RGNFTEEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 99
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.36949IPR017930Myb domain
SMARTSM007171.6E-61351IPR001005SANT/Myb domain
SuperFamilySSF466892.05E-241396IPR009057Homeodomain-like
PfamPF002491.1E-61449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-151556IPR009057Homeodomain-like
PROSITE profilePS5129429.40150104IPR017930Myb domain
SMARTSM007172.3E-1854102IPR001005SANT/Myb domain
PfamPF002491.6E-175599IPR001005SANT/Myb domain
CDDcd001672.10E-1357100No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2857104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGLLRCGKS CRLRWINYLR PDLKRGNFTE  60
EEDELIINLH SLLGNKWSLI AARLPGRTDN EIKNYWNTHI KRKLYSRGID PQTHRPLNAS  120
ATPATTATAT AVPSANSSKK INNNNNNIDN DINNNNNGFQ LVSNSAYANT KIGTNLVAAE  180
DSNSSSGVTT EESVPHHQLN LDLSIGLPSQ PQGSSLNPEK LKPEPQEHDD QKPQVLYKWY  240
GNITSQQGVC LCYNLGLQSN QTCYCKTMGT ATTTTATDSN LYRFYRPMNI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141047108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G205100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971270.0BT097127.1 Soybean clone JCVI-FLGm-21J21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242477.21e-175myb-related protein 308-like
SwissprotP813932e-75MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0R0KAN70.0A0A0R0KAN7_SOYBN; Uncharacterized protein
STRINGGLYMA04G38240.11e-174(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-73myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]