PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G201900.1.p
Common NameGLYMA_04G201900, LOC100799190
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 263aa    MW: 29209.7 Da    PI: 6.9273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-2086135255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Glyma.04G201900.1.p  86 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 135
                          7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3385144IPR001471AP2/ERF domain
CDDcd000186.86E-2186144No hitNo description
SMARTSM003801.1E-3786149IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2286144IPR016177DNA-binding domain
PfamPF008479.7E-1486135IPR001471AP2/ERF domain
PROSITE profilePS5103224.94886143IPR001471AP2/ERF domain
PRINTSPR003671.7E-118798IPR001471AP2/ERF domain
PRINTSPR003671.7E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEGRSISHSS EREEEYGLFP IYSERSQQDM SAMVSALTQV IGGSNSDSLH MHEGLLTSSH  60
NNTSTQNTNE QSQVQQQEQG SVRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFETAE  120
AAALAYDEAA LRFKGSKAKL NFPERVQGTA SEFGYLTNQH MSSSSTNSNP VAPHLTTQET  180
YSPSHFQYAQ QQFMSGESNS FSNQDMLRFY GGDNMFVSSQ QSASSSSSTA LSQQQQEELL  240
KFSMQFGGSS HSNHSGNWRG GH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2785146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G201900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-91AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522453.10.0ethylene-responsive transcription factor ERF114
SwissprotQ9FH542e-59EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0R0KAJ20.0A0A0R0KAJ2_SOYBN; Uncharacterized protein
STRINGGLYMA06G17180.21e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]