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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G200600.1.p | ||||||||
Common Name | GLYMA_04G200600, LOC100797082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 844aa MW: 93884.5 Da PI: 6.7571 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.9e-23 | 142 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ ++W++k+i+r++++r++l++GW+ Fv++++L +gD ++F Glyma.04G200600.1.p 142 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 229 99*****************************63.4445569************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ Glyma.04G200600.1.p 230 -RGENGELRVGVRRA 243 .449999*****996 PP | |||||||
2 | Auxin_resp | 121.7 | 5.3e-40 | 268 | 350 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk Glyma.04G200600.1.p 268 AWHAISTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLK 350 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.89E-40 | 138 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-40 | 139 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-20 | 140 | 242 | No hit | No description |
SMART | SM01019 | 2.9E-22 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-21 | 142 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.406 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-37 | 268 | 350 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.127 | 713 | 795 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.4E-10 | 716 | 790 | No hit | No description |
Pfam | PF02309 | 2.5E-7 | 754 | 801 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MTSLEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPRERERVFY 60 FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ 120 DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ 180 ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV 240 RRAMRQQGNV PSSVISSHSM HLGVLATAWH AISTGTIFTV YYKPRTSPAE FIVPYDQYME 300 SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPKR WRDSKWRCLK VRWDETSNTP 360 RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN 420 GFPRVLQGQE FSTLRGNFAE SNESDTAEKS VVWPPAAVDD EKMDVSTSRR YGSESWMSMG 480 RNEPTYSDLL SGFGASGDPS HLSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL 540 SILDSNTKGP AHGGDTTYKA RGNLRYSAFG EYPALHGHKV EHSHGNLMPP PPALLTQYQS 600 PCSRELMSKQ VSAKTCEAVK PKDGDCKLFG FSLISGPTLP EPSLSQRNVS EAADQMHLTA 660 HQQRTSENDE KLDHSKGSRP VDDIVVDDQD RPLRTSQLHT KDVQAKPLSG SARSCTKVHK 720 KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVFTDNEG DMMLVGDDPW 780 QEFCAMVRKI YIYPKEEIQK MSPGTLSSKN EENHSVTASE GADTKDVKCQ PHQKFNSENG 840 LDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59482 | 0.0 | epicotyl| hypocotyl| leaf| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G200600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523174.1 | 0.0 | auxin response factor 2B | ||||
Refseq | XP_028229492.1 | 0.0 | auxin response factor 2B-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A445L2R5 | 0.0 | A0A445L2R5_GLYSO; Auxin response factor | ||||
TrEMBL | I1JXQ2 | 0.0 | I1JXQ2_SOYBN; Auxin response factor | ||||
STRING | GLYMA04G37760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G200600.1.p |
Entrez Gene | 100797082 |