PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G199000.1.p
Common NameGLYMA_04G199000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 170aa    MW: 18797.8 Da    PI: 5.2415
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G199000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM431.4e-13287385128
                  NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          atg+dk + s+  +    gl+ktLvfy+g++p+g++tdWvmheyrl
  Glyma.04G199000.1.p  28 ATGSDKIISSSvsNIGFAGLRKTLVFYEGKSPNGSRTDWVMHEYRL 73 
                          5888888888643444499*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.245190IPR003441NAC domain
SuperFamilySSF1019416.67E-221090IPR003441NAC domain
PfamPF023655.6E-64373IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MERINFIENG VSGLPPGFRF QPTDEELATG SDKIISSSVS NIGFAGLRKT LVFYEGKSPN  60
GSRTDWVMHE YRLNYANEIG EWILCRIFMK KRNIESDNNT TAPRKNNNAV MNNVEVAQPR  120
FFDFLSVHNS APPAPIQYSS TSSSCSSSNN VVEASSPNHE ETSGYADFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-162891100166NO APICAL MERISTEM PROTEIN
1ut4_B4e-162891100166NO APICAL MERISTEM PROTEIN
1ut7_A4e-162891100166NO APICAL MERISTEM PROTEIN
1ut7_B4e-162891100166NO APICAL MERISTEM PROTEIN
3swm_A4e-162891103169NAC domain-containing protein 19
3swm_B4e-162891103169NAC domain-containing protein 19
3swm_C4e-162891103169NAC domain-containing protein 19
3swm_D4e-162891103169NAC domain-containing protein 19
3swp_A4e-162891103169NAC domain-containing protein 19
3swp_B4e-162891103169NAC domain-containing protein 19
3swp_C4e-162891103169NAC domain-containing protein 19
3swp_D4e-162891103169NAC domain-containing protein 19
4dul_A4e-162891100166NAC domain-containing protein 19
4dul_B4e-162891100166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G199000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359081e-161AC235908.2 Glycine max clone GM_WBc0208D21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528094.12e-66NAC domain-containing protein 83
RefseqXP_028236759.12e-66NAC domain-containing protein 83-like
TrEMBLK7KL841e-122K7KL84_SOYBN; Uncharacterized protein
STRINGGLYMA04G37590.21e-123(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-19NAC domain containing protein 83