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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G192400.1.p | ||||||||
Common Name | GLYMA_04G192400, LOC102661564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 614aa MW: 69014.9 Da PI: 6.3162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 7e-13 | 32 | 121 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk t+ +l+ l++p f ++ +++ +k++ l+d+s r+W+vk+ ++ g++ + +GW+ F +g+k+g +vF ++++ Glyma.04G192400.1.p 32 FFKLITKREHLT--TLYIPPAFSSTVsDLV---NKKIALNDSSERQWNVKV--SGFNGSFAFMEGWSTFSLNHGVKVGYLLVFNYVKDLH 114 666665555554..49******98886555...468***************..88889999999********************998666 PP E..EEEEE- CS B3 90 felvvkvfr 98 f vk+++ Glyma.04G192400.1.p 115 F--DVKIYD 121 5..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-18 | 26 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-18 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.914 | 30 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.94E-13 | 31 | 121 | No hit | No description |
SMART | SM01019 | 7.0E-12 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-11 | 32 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.92E-6 | 517 | 592 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-9 | 531 | 596 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-8 | 540 | 596 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.896 | 549 | 613 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MCGERQRVSA CAACTNNCLL FHKTKQTSPT SFFKLITKRE HLTTLYIPPA FSSTVSDLVN 60 KKIALNDSSE RQWNVKVSGF NGSFAFMEGW STFSLNHGVK VGYLLVFNYV KDLHFDVKIY 120 DPSACEKLNF PKTRNQKKRS RGRSGSPVRD CMLVGQESNA LVVTQHYVPK MKSQRSEVDL 180 VVRKNGEESG QLMCISELHE DPCYSTSLEF DQSHGVNGTM KIVNGDLKVS NVDYGSHIFE 240 NDAIVCSKDT MFEGIFSMAA ALDISEFEMS GRSTSLGEAD KSTHDKTSTL NIEENKESKA 300 IMYSGEAQEC QFSNVLESDQ AAISKKEPAL HIDGSCNTKN KFNEISNHLD TYIHNGEMKK 360 LPVDKTPKLY SSVDKLNVTG LPKETKGKLD HYSDPFNQDN ESHFKTAPPL MSNGEAQECQ 420 FSEGLESDQA AISKKEPALH ICGFSDTKQN FDGISNDLDG HIYNGEMKKL PMDMTPKLCG 480 SMDKLNITEL PKEIKDSDIS NQDDESHFKT APPLSCVVTN DNDNVSLKLP EYLPLTRRVK 540 PFTHKKMVVL LRDSQMRLWP VFYHEQPRLL THGWLDFSRA NNIQPEDECI FEVEPDPESR 600 YQRILAVSIV HKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G192400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235340 | 1e-163 | AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578683.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X1 | ||||
Refseq | XP_006578684.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X1 | ||||
Refseq | XP_028229378.1 | 0.0 | B3 domain-containing protein Os01g0905400-like isoform X1 | ||||
Refseq | XP_028229379.1 | 0.0 | B3 domain-containing protein Os01g0905400-like isoform X1 | ||||
TrEMBL | A0A0B2P8Y3 | 0.0 | A0A0B2P8Y3_GLYSO; B3 domain-containing protein | ||||
TrEMBL | I1JXG1 | 0.0 | I1JXG1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G36750.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Representative plant | OGRP8972 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 5e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G192400.1.p |
Entrez Gene | 102661564 |