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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G186900.2.p | ||||||||
Common Name | ELP2, GLYMA_04G186900, LOC100800614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19963.3 Da PI: 5.7667 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.2 | 8e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l Glyma.04G186900.2.p 10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKL 99 7***************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++++ Glyma.04G186900.2.p 100 QKELDSANA 108 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.673 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-44 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSSSYNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP 60 HQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVQKLQ KELDSANADL LRFACNDMPP 120 PSLSVPPQIP QRSFSAGFGN NNESASGGEF YRPSPTTTYS YPYSLPWTDT SSEDINDGGG 180 NL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-68 | 3 | 118 | 4 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-68 | 3 | 118 | 4 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G186900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ653165 | 0.0 | JQ653165.1 Glycine max elongated petiolule 2 (ELP2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523096.1 | 1e-133 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_006578652.1 | 1e-133 | protein LATERAL ORGAN BOUNDARIES | ||||
Swissprot | Q9FML4 | 8e-73 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | I1JXA7 | 1e-132 | I1JXA7_SOYBN; Elongated petiolule 2 | ||||
STRING | GLYMA04G36080.1 | 1e-133 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-74 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G186900.2.p |
Entrez Gene | 100800614 |
Publications ? help Back to Top | |||
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