PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G186100.1.p | ||||||||
Common Name | GLYMA_04G186100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 106aa MW: 12305.3 Da PI: 9.5676 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.9 | 6.5e-08 | 21 | 86 | 4 | 67 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtg..Ckaklk 67 Y++ v Fs++k + ++ ge+++rtf Cs+ g+++ + + + ++r+ r+ r++ C+++ Glyma.04G186100.1.p 21 TWYSRIVNFSIQKIHVLRN-SLGETIQRTFLCSRAGRKNYRGASsSGRKRKARNGIRCErcCRCMCD 86 569999********99998.7888****************999853344444444444222666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-5 | 21 | 85 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MHDVIDKLDY VDLETAYMFC TWYSRIVNFS IQKIHVLRNS LGETIQRTFL CSRAGRKNYR 60 GASSSGRKRK ARNGIRCERC CRCMCDLAYF FPSYVHVLSI QNHIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G186100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235231 | 1e-178 | AC235231.1 Glycine max strain Williams 82 clone GM_WBb0026L18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K7KKZ2 | 7e-73 | K7KKZ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G35955.2 | 1e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G186100.1.p |