PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G186100.1.p

Common Name

GLYMA_04G186100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 106aa MW: 12305.3 Da PI: 9.5676

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G186100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.9	6.5e-08	21	86	4	67
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtg..Ckaklk 67 Y++ v Fs++k + ++ ge+++rtf Cs+ g+++ + + + ++r+ r+ r++ C+++ Glyma.04G186100.1.p 21 TWYSRIVNFSIQKIHVLRN-SLGETIQRTFLCSRAGRKNYRGASsSGRKRKARNGIRCErcCRCMCD 86 569999******99998.7888**************999853344444444444222666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	21	85	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MHDVIDKLDY VDLETAYMFC TWYSRIVNFS IQKIHVLRNS LGETIQRTFL CSRAGRKNYR 60 GASSSGRKRK ARNGIRCERC CRCMCDLAYF FPSYVHVLSI QNHIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G186100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235231	1e-178	AC235231.1 Glycine max strain Williams 82 clone GM_WBb0026L18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K7KKZ2	7e-73	K7KKZ2_SOYBN; Uncharacterized protein
STRING	GLYMA04G35955.2	1e-73	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Link Out ? help Back to Top
Phytozome	Glyma.04G186100.1.p