PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G185100.1.p
Common NameGLYMA_04G185100, LOC102662019
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 279aa    MW: 31949.3 Da    PI: 6.376
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G185100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.6e-092232572155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yp+ +++  LA+++gL+++qV +WF N+R ++
  Glyma.04G185100.1.p 223 KWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRH 257
                          469*****************************885 PP
2ELK32.91.5e-11177198122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+ Llr Ysgy+ +L++EFs
  Glyma.04G185100.1.p 177 ELKDNLLRRYSGYITNLRHEFS 198
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-143983IPR005540KNOX1
PfamPF037902.6E-154179IPR005540KNOX1
SMARTSM012561.4E-1991142IPR005541KNOX2
PfamPF037911.4E-2196141IPR005541KNOX2
PROSITE profilePS5121310.545177197IPR005539ELK domain
PfamPF037891.2E-10177198IPR005539ELK domain
SMARTSM011886.9E-7177198IPR005539ELK domain
PROSITE profilePS5007112.293197260IPR001356Homeobox domain
SuperFamilySSF466892.61E-19198269IPR009057Homeodomain-like
SMARTSM003891.1E-11199264IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-26202263IPR009057Homeodomain-like
CDDcd000861.33E-12212260No hitNo description
PfamPF059207.1E-16217256IPR008422Homeobox KN domain
PROSITE patternPS000270235258IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESSLYDFYY SATYSDESTM APFAPSNKPV FGKEEDVSKV LRAKVASHPL FPHLLHAYMD  60
CHKVGAPQDV AHLLEGIKGE HTSGVCQISE SEGFLGTDPE LDDFMGTFCD LLVKYKSDLL  120
KPFNEATMFL NLMETQLHSI CNNTPPQPDE VTHGSPGKDL SRVKKEAIEG KRMEVQELKD  180
NLLRRYSGYI TNLRHEFSKK KKKEKLPKEA KQILLSWWNV HFKWPYPTDA DKVALAEWTG  240
LDQKQVNNWF INQRKRHWKP TEEMHAEILD GLYGSLDE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G185100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578641.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-82KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLK7KKY50.0K7KKY5_SOYBN; Uncharacterized protein
STRINGGLYMA04G35850.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]