PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 417aa MW: 48541 Da PI: 6.9788

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G184200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	199	241	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT eEd+ l++++ + G++ W+ Ia +++ gRt++++k++w+ Glyma.04G184200.1.p 199 KDTWTDEEDKVLIEVHDEVGNK-WAEIATRLP-GRTENSIKNHWN 241 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.972	149	193	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-12	173	205	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.75E-26	173	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.703	194	248	IPR017930	Myb domain
SMART	SM00717	1.4E-15	198	246	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	199	241	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-11	201	244	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-18	206	242	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MDLETMFKET YVSQPTHLQE SCLQPSLKDV LLSSYGFFKD FHHIDQFHHV NISSSNTIQT 60 PNFDAFDNFT NTGSSPDFDF MISQRNQLDM MVANQRFLPF NPQEIKPSNF VVPYEVSCTS 120 PVYYYKRVGV NKNNKSYPTT RRTFKVRKKS NIVKGKWTID DGFTISNSIQ PHIAKILPGR 180 IGKQRRERWH NHLRPDIKKD TWTDEEDKVL IEVHDEVGNK WAEIATRLPG RTENSIKNHW 240 NATKRRQHSK RKCRSKYLRG TLLQEYIKSL NLDKNPPRYY RRKCSSNYGS AIMSDDNKIS 300 TTLPQTAFQF CAATDFLAPN YDFRVVPDFF FGENLFEEGC NVDSLLDGVP CAPLMDKKDF 360 EEKLQCDDLT MCVPFVNIDE NHIETEMPLE MLEVELKKEL DLVEMMSQIN NEILHV*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MDLETMFKET YVSQPTHLQE SCLQPSLKDV LLSSYGFFKD FHHIDQFHHV NISSSNTIQT  60
PNFDAFDNFT NTGSSPDFDF MISQRNQLDM MVANQRFLPF NPQEIKPSNF VVPYEVSCTS  120
PVYYYKRVGV NKNNKSYPTT RRTFKVRKKS NIVKGKWTID DGFTISNSIQ PHIAKILPGR  180
IGKQRRERWH NHLRPDIKKD TWTDEEDKVL IEVHDEVGNK WAEIATRLPG RTENSIKNHW  240
NATKRRQHSK RKCRSKYLRG TLLQEYIKSL NLDKNPPRYY RRKCSSNYGS AIMSDDNKIS  300
TTLPQTAFQF CAATDFLAPN YDFRVVPDFF FGENLFEEGC NVDSLLDGVP CAPLMDKKDF  360
EEKLQCDDLT MCVPFVNIDE NHIETEMPLE MLEVELKKEL DLVEMMSQIN NEILHV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	4e-33	152	247	2	104	C-Myb DNA-Binding Domain
1msf_C	4e-33	152	247	2	104	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269\|PubMed:16214903}.
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G184200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ686871	0.0	FJ686871.1 Glycine max clone gmw1-61M05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006582524.1	0.0	transcription factor MYB98
Swissprot	Q9S7L2	7e-72	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A0R0KEM6	0.0	A0A0R0KEM6_SOYBN; Uncharacterized protein
STRING	GLYMA06G19280.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1570	31	96
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-74	myb domain protein 98

Link Out ? help Back to Top
Phytozome	Glyma.04G184200.1.p

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]