PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G177400.1.p
Common NameGLYMA_04G177400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 530aa    MW: 61162.7 Da    PI: 9.9724
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G177400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.95e-1151116158
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraet 58 
                          +fY +YA evGF++++s + k  ++gei+ + +vCs++g++ee++++         +  + r+r+et
  Glyma.04G177400.1.p  51 NFYTTYALEVGFNICRSIEVKY-KDGEIKFKYYVCSRQGFKEENRRTisvmlvdekRMPKTRRRKET 116
                          6****************99998.8899****************999988888776533333344443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-851116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEISDNDANV TTPSKGLNDH VYTLQRWVPK CDQQLKPVVG NVFDTLEEGN NFYTTYALEV  60
GFNICRSIEV KYKDGEIKFK YYVCSRQGFK EENRRTISVM LVDEKRMPKT RRRKETREEF  120
FRFYEGHKHA LATPTKKQFL KSARNVNNVH KNLLLCFDKA NVVPSKACQI MNSKVFTSVS  180
PKFCIWHILK KLSEKLRASL NANTDFHSHF KSCVSNLESS KEFELTWKAI ICDFNMWIST  240
YFKDTFLVGI LRTTSRSESE NSLFGNYLNK NLSLVEFWMR FNSAIESQRH TELLVDNVTL  300
NTMPELKLHS DIEKHGREVY THENLTFFKM SYGMHVRIVG LKKQKRTIGQ LLIFILDHIM  360
VNGSKVRKMK EVAYNSSNHI THCSHKKFES EGIPFGNVLN ACSKLESESK LIFDAWAQLF  420
KCMHMAGTCK EKLLLVINEA SNIKLKLTKM KGDVRSSKLH DLESFIGSNV PMEIAILPPQ  480
TSNTKGCGKQ IKGGKEKAME QQQKRRRRCK ACKQYAYHDS RNCPTKPSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G177400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0KG300.0A0A0R0KG30_SOYBN; Uncharacterized protein
STRINGGLYMA04G34745.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1492834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-23FAR1-related sequence 5