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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G176900.1.p | ||||||||
Common Name | GLYMA_04G176900, LOC100306638 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 26199.2 Da PI: 6.6321 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.6e-11 | 124 | 171 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Glyma.04G176900.1.p 124 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 171 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.32E-11 | 118 | 175 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-18 | 118 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-18 | 120 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-8 | 124 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDPPLISDST FSPAYSLAEI WPGMPHFPDH SHLTATAPTK GKDSTAADEV LSSTTTANLS 60 NNDSGSNKRM KVGGSSFEND GFKAEAEASS VGGNKSSEQS NKPCEAPKPD YIHVRARRGQ 120 ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK 180 LEAVNSRMNT NPTIDGFPSK DVGTQPFDIA GMVFGSQAAR GYAQGSSHPG WLHMQIGGGF 240 ETT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22601 | 0.0 | hypocotyl| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G176900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090847 | 0.0 | BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237962.2 | 0.0 | helix loop helix domain-containing protein | ||||
Refseq | XP_028229159.1 | 0.0 | transcription factor bHLH79-like | ||||
Swissprot | Q69WS3 | 1e-73 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A445L1L4 | 0.0 | A0A445L1L4_GLYSO; Transcription factor BHLH094 | ||||
TrEMBL | I1JX08 | 0.0 | I1JX08_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G34660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-75 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G176900.1.p |
Entrez Gene | 100306638 |