PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G166900.1.p
Common NameGLYMA_04G166900, Glyma04g33210.1, LOC100775267
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 387aa    MW: 42552.7 Da    PI: 7.658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ed++l+ +++++G+g+W+t +++ g++R++k+c++rw++yl
  Glyma.04G166900.1.p 14 KGAWTVQEDQKLITYIQKHGTGSWRTLPQKAGLKRCGKSCRLRWFNYL 61
                         79********************************************97 PP
2Myb_DNA-binding47.93e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ ++eE++ ++++ + lG++ W++Ia++++  Rt++++k++w++yl
  Glyma.04G166900.1.p  67 RGKLSQEEEQTIIKLRAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 112
                          7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.514965IPR017930Myb domain
SuperFamilySSF466891.17E-2712108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001672.04E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2365115IPR009057Homeodomain-like
SMARTSM007174.8E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.12866116IPR017930Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.49E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRTPCCSHE ELRKGAWTVQ EDQKLITYIQ KHGTGSWRTL PQKAGLKRCG KSCRLRWFNY  60
LRPDIKRGKL SQEEEQTIIK LRAVLGNRWS SIAKHLPMRT DNEIKNYWNS YLKKQFEKNA  120
VDPSSSKPNS TDSSSESKSN DTCMVPSEKT DCHEPNTSQS HQHNLSRSIS SSTHLLNKVA  180
SKILASGYLE LIKSCQPVVA GNSKSESVVK TGIGLESDNI RDPLEPNLTS PSHSITSAKL  240
LNKMATSLPH KVHGLEAAKA VFSKLMENSE KGATASDDSF VGGCLNALSP FEDKPHITKT  300
IDSPSGPTLM FNHVTTPSCF SEDNEDNWQC VSSNYVSFKI CAANGGDCSV SEINLGESSS  360
STSSFLFENA DLGTCDDEIS KYIQYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29111174109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.528960.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G166900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311890.0KT031189.1 Glycine max clone HN_CCL_77 MYB/HD-like transcription factor (Glyma04g33210.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522319.10.0transcription repressor MYB6
RefseqXP_028229070.10.0transcription repressor MYB6-like
TrEMBLA0A0B2PAS00.0A0A0B2PAS0_GLYSO; Transcription factor MYB16
TrEMBLI1JWT00.0I1JWT0_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA04G33210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699968
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-61myb domain protein 16
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]