PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 105aa MW: 12490.3 Da PI: 10.4622

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G141700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.2e-07	13	48	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+ +vk +G + R +k+c++rw +yl Glyma.04G141700.1.p 13 KGPWTSEEDRLLILYVKFHGLK------------RNGKSCRLRWVNYL 48 79******************55............67799999999997 PP
2	Myb_DNA-binding	34.7	4.2e-11	55	94	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ +++++++ + W+tIar ++ gRt++++k++w+++ Glyma.04G141700.1.p 55 GQITPQEESIILELHA----R-WSTIARSLP-GRTDNEIKNYWRTH 94 5567777777777775....6.*******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.8E-5	12	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.99E-22	13	96	IPR009057	Homeodomain-like
Pfam	PF00249	6.4E-6	13	48	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-14	14	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.972	49	99	IPR017930	Myb domain
SMART	SM00717	1.2E-6	53	97	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-8	54	94	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-20	56	99	IPR009057	Homeodomain-like
CDD	cd00167	9.13E-8	58	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGWGVIEEEG WRKGPWTSEE DRLLILYVKF HGLKRNGKSC RLRWVNYLRP DLEKGQITPQ 60 EESIILELHA RWSTIARSLP GRTDNEIKNY WRTHFKKKIR AHFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-22	13	99	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269\|PubMed:16531467}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G141700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097047	5e-67	BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014632633.1	5e-66	myb-related protein 305
Swissprot	Q9LX82	2e-38	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A0R0KFL0	1e-70	A0A0R0KFL0_SOYBN; Uncharacterized protein
STRING	GLYMA04G26650.1	2e-65	(Glycine max)
STRING	GLYMA06G38340.1	2e-65	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	3e-53	myb domain protein 305

Link Out ? help Back to Top
Phytozome	Glyma.04G141700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]