PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G138900.1.p
Common NameGLYMA_04G138900, LOC106798410
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 444aa    MW: 50345.1 Da    PI: 6.9731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G138900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.31.7e-118244392373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA++v+sg+ ++a+  L+ + +++spdg+++qR+++yf eAL  r+ ++ +++yk+l+ps+ts   sse + ++k+f+e++P+l
  Glyma.04G138900.1.p  24 ISLLIDCAKCVASGSIKNADIGLEYIYQISSPDGNAVQRMVTYFSEALGYRIIKNLPGVYKSLNPSKTS--LSSEDILVQKYFYELCPFL 111
                          579**************************************************************9998..79***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfs+l++N+aI ea+e e+ vHiiD+   +++QW+ Ll ++ +R++gpp+l+iTg+++    +ke l +++  L+  A +l+ p++f + 
  Glyma.04G138900.1.p 112 KFSYLITNHAIAEAMECEKVVHIIDLHCCEPTQWIDLLLTFKNRQGGPPHLKITGIHE----KKEVLDQMNFHLTTEAGKLDFPLQFYP- 196
                          **********************************************************....9**************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrll........................................................d 215
                          v+++led+++e+L vk g+ala+ +vlqlh+ll                                                         
  Glyma.04G138900.1.p 197 VVSKLEDVDFEKLPVKIGDALAITSVLQLHSLLatdddmagrispaaaasmnvqralhmgqrtfaewlerdminaytlspdsalsplslG 286
                          799*****************************************************************************9997764444 PP

                 GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                           s +       +L+++++l+Pk+vv++eqe+++n+++++er+ +al++ysalfd+l++++ ++s er+k+E +llg++i+n++aceg +r
  Glyma.04G138900.1.p 287 ASPK----MGIFLNAIRKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMKTSVERQKLESKLLGEQIKNIIACEGVDR 372
                          4444....566******************************************************************************* PP

                 GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          +erhe+lekW +rle+aGF++vpls++   +ak ll++++++ y+  ee+++l+ +W+drpL+svSaW
  Glyma.04G138900.1.p 373 KERHEKLEKWIRRLEMAGFEKVPLSYNGRLEAKNLLQRYSNK-YKFREENDCLLVCWSDRPLFSVSAW 439
                          ****************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.9541421IPR005202Transcription factor GRAS
PfamPF035146.0E-11624439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGLGSPSQW LRELRWDSQG LNPISLLIDC AKCVASGSIK NADIGLEYIY QISSPDGNAV  60
QRMVTYFSEA LGYRIIKNLP GVYKSLNPSK TSLSSEDILV QKYFYELCPF LKFSYLITNH  120
AIAEAMECEK VVHIIDLHCC EPTQWIDLLL TFKNRQGGPP HLKITGIHEK KEVLDQMNFH  180
LTTEAGKLDF PLQFYPVVSK LEDVDFEKLP VKIGDALAIT SVLQLHSLLA TDDDMAGRIS  240
PAAAASMNVQ RALHMGQRTF AEWLERDMIN AYTLSPDSAL SPLSLGASPK MGIFLNAIRK  300
LQPKLVVITE QESNLNGSNL MERVDRALYF YSALFDCLDS TVMKTSVERQ KLESKLLGEQ  360
IKNIIACEGV DRKERHEKLE KWIRRLEMAG FEKVPLSYNG RLEAKNLLQR YSNKYKFREE  420
NDCLLVCWSD RPLFSVSAWS FRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5464421380Protein SCARECROW
5b3h_D5e-5464421380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.446620.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G138900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630159.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-149SCL3_ARATH; Scarecrow-like protein 3
TrEMBLI1JWI20.0I1JWI2_SOYBN; Uncharacterized protein
STRINGGLYMA04G28490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-150scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]