PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G136700.2.p | ||||||||
Common Name | GLYMA_04G136700, LOC100806835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 333aa MW: 35377.4 Da PI: 8.1854 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 181.8 | 2.9e-56 | 135 | 287 | 7 | 153 |
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 CqdCGn+akkdC+++RCRtCCk rg+dC+thvkstW+p+ +rrer + a+ + kr+r ++q+a+s+++ s+a++ Glyma.04G136700.2.p 135 VCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASG----GGVGGNGGCKRPRAVVGSSQNATSHSSNSNATT 220 6********************************************97766664....333467788888888888888888888888888 PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +k+l tss lP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Glyma.04G136700.2.p 221 PKSLATSSfhqdasfkqsLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVD 287 888888888888888999***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 6.0E-26 | 135 | 177 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 1.3E-53 | 135 | 287 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 6.0E-24 | 239 | 286 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MSMLGLRDLV LIAQTPSSLH HQHQGQPISE NQTHTHTPNL PLPSSAASLS VGFGIFPLLT 60 ATPCVPQPHQ NNEVQECGGG GANSNTTTTN YWNLKMCQEV NNPPKKGVIN VADHDDEKGV 120 MESEENGVYG PDFRVCQDCG NRAKKDCVFR RCRTCCKGRG YDCNTHVKST WIPSVRRRER 180 EITVASGGGV GGNGGCKRPR AVVGSSQNAT SHSSNSNATT PKSLATSSFH QDASFKQSLP 240 GHVRAPAVFK CHRVSAIGNG EDEFAYLATV QISGHVFKGF LYDHGVDGKT ANVVPCVSEL 300 QLGNNCSGKN RECSSAIAIG VANNNAYPAS AS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G136700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235897 | 0.0 | AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578434.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_028228778.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Refseq | XP_028228779.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A445KZZ3 | 0.0 | A0A445KZZ3_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A | ||||
TrEMBL | K7KK00 | 0.0 | K7KK00_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G17885.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-49 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G136700.2.p |
Entrez Gene | 100806835 |