PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G126200.1.p
Common NameGLYMA_04G126200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 269aa    MW: 30088.9 Da    PI: 7.1097
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G126200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-192580257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR   t+ ql++Le+++++++yp++e++  LA++lgLte+q++ WF+ rR k+k+
  Glyma.04G126200.1.p 25 KKRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKR 80
                         89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-201280IPR009057Homeodomain-like
SuperFamilySSF466891.03E-182185IPR009057Homeodomain-like
PROSITE profilePS5007116.9572181IPR001356Homeobox domain
SMARTSM003891.2E-192385IPR001356Homeobox domain
CDDcd000861.45E-182580No hitNo description
PfamPF000461.9E-162580IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEQPPNLWTF ELQSEENKVS NEKNKKRKLK TPAQLKALEN FYNEHKYPTE EMKLVLAEEL  60
GLTEKQISGW FCHRRLKDKR LMKDEAVANG RQDRSSGVIQ DRGSGLGQDS CGSSKHADHR  120
YLDPKEVESH GLYNHELSVA DMTHGCRNQR LFSQGLDPYD MEPSRHLTPN GALPPLNPKG  180
AINMGHKPSG YLKVKGEIEH AAITAVKKQL GRHYLEDGPL LGIEFDLLPP GAFECQTADP  240
ANEPYSATNP LLLNSPEISA AKRQPSISS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184750.0cotyledon| flower| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G126200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-111AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545402.10.0uncharacterized protein LOC100803515
RefseqXP_028201159.10.0uncharacterized protein LOC114385327
TrEMBLA0A0R0KE850.0A0A0R0KE85_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA14G03850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-73HB-other family protein