PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G111200.3.p | ||||||||
Common Name | GLYMA_04G111200, LOC100787741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 242aa MW: 27893.7 Da PI: 6.2469 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.6e-27 | 77 | 165 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++ra+tr gCka++++k +k+gkw++tk++++HnH+l+ Glyma.04G111200.3.p 77 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 165 9**************************************999999989***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.2E-25 | 77 | 165 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MESQLIDGND EMEVSGDVGL STCEVQMHQE TYEVDPNEGC RVLESSSWGE LGICEDHAIQ 60 EPYEGMEFES EDAAKLFYDE YARRLGFVMR VMSCRRSERD GRILARRLGC NKEGYCVSIR 120 GKFASVRKPR ASTREGCKAM IHIKYDKSGK WVITKFVKDH NHPLVVSPRE ARQTMDEKDK 180 KIQELTAELR LKKRLCATYQ EQLTSFMKIV EEHNEKLSAK IHHVVNNLKE FESIEELLHQ 240 T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.60225 | 0.0 | cotyledon| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G111200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144425 | 1e-177 | BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630091.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_014630092.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_014630093.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_028228554.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2-like isoform X2 | ||||
TrEMBL | A0A445KYN3 | 1e-180 | A0A445KYN3_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A | ||||
TrEMBL | K7KJE4 | 1e-180 | K7KJE4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G12273.1 | 1e-180 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-107 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G111200.3.p |
Entrez Gene | 100787741 |