PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G111200.1.p
Common NameGLYMA_04G111200, LOC100787741
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 242aa    MW: 27893.7 Da    PI: 6.2469
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G111200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.6e-2777165290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fY+eYA+++GF +r+ + ++s+r+g+i  r++ C+keg+  + + k  + r++ra+tr gCka++++k +k+gkw++tk++++HnH+l+
  Glyma.04G111200.1.p  77 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 165
                          9**************************************999999989***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-2577165IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESQLIDGND EMEVSGDVGL STCEVQMHQE TYEVDPNEGC RVLESSSWGE LGICEDHAIQ  60
EPYEGMEFES EDAAKLFYDE YARRLGFVMR VMSCRRSERD GRILARRLGC NKEGYCVSIR  120
GKFASVRKPR ASTREGCKAM IHIKYDKSGK WVITKFVKDH NHPLVVSPRE ARQTMDEKDK  180
KIQELTAELR LKKRLCATYQ EQLTSFMKIV EEHNEKLSAK IHHVVNNLKE FESIEELLHQ  240
T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.602250.0cotyledon| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G111200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444251e-177BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630091.10.0protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_014630092.10.0protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_014630093.10.0protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_028228554.10.0protein FAR1-RELATED SEQUENCE 2-like isoform X2
TrEMBLA0A445KYN31e-180A0A445KYN3_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
TrEMBLK7KJE41e-180K7KJE4_SOYBN; Uncharacterized protein
STRINGGLYMA04G12273.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-107FAR1 family protein