PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G106400.2.p

Common Name

GLYMA_04G106400, LOC100812543

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 213aa MW: 23382.7 Da PI: 9.0048

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G106400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.9e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql Glyma.04G106400.2.p 7 PCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAIKSLAYEAEARLRDPVYGCVGLISILQHRLKQL 96 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+++k+e Glyma.04G106400.2.p 97 QSELHRAKKE 106 ****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSSSNSPCAA CKIQRRKCTQ ECVFAPYFPP DNPQRFAYVH KVFGASNVAK LLNELNAAQR 60 EDAIKSLAYE AEARLRDPVY GCVGLISILQ HRLKQLQSEL HRAKKELASY VGPQAMLPPP 120 PPPPLLPPQS PRTFSLFPFK TAPTNQQDLF GFHDDGGASA SHGVLNHHLA LFSPSPAVDH 180 AFSHPPMHSL ALPHHSHLTR SPMQPRHQTD PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G106400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578337.1	1e-154	LOB domain-containing protein 36
Refseq	XP_006578338.1	1e-154	LOB domain-containing protein 36
Refseq	XP_028228531.1	1e-154	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	6e-67	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A445KZ86	1e-152	A0A445KZ86_GLYSO; LOB domain-containing protein 36
TrEMBL	K7KJC7	1e-152	K7KJC7_SOYBN; Uncharacterized protein
STRING	GLYMA04G11991.1	1e-153	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-67	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Glyma.04G106400.2.p
Entrez Gene	100812543

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]