PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 325aa MW: 36450.1 Da PI: 6.1759

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G098400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.9e-13	130	181	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Glyma.04G098400.1.p 130 QRRTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 181 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.40E-14	128	185	No hit	No description
SuperFamily	SSF47459	7.98E-17	128	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.313	129	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-11	130	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-14	130	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-10	135	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MALEAVVFPQ DPFTYGCDKD YLYSLVEHNY GNFQAAEEEK VLLGIINNNI EHNFHANWDS 60 SSTSMLQNVK EQQWDSHSSP EACTVDQSMT TAPFPPPPPS SSVEATVTAT SRRKRRRTKS 120 AKNTEEIENQ RRTHIAVERN RRKQMNEYLA VLRSLMPSSY VQRGDQASII GGAINFVKEL 180 EQLLQSMEGQ KRTNQAQENV VGLNGSTTTP FAEFFTFPQY TTRGRTMAQE QKQWAVADIE 240 VTMVDSHANL KVLSKKQPGQ LMKIVVGLQS LMLSILHLNV STLDDMVLYS ISVKVEDGCR 300 LNTVDEIAAA VNQLLRTIQE VTFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	RKRRR
2	112	117	RKRRRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56249	0.0	hypocotyl\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G098400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097937	0.0	BT097937.1 Soybean clone JCVI-FLGm-22B18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522778.1	0.0	transcription factor bHLH94
Swissprot	Q9C7T4	9e-93	BH096_ARATH; Transcription factor bHLH96
TrEMBL	I1JVA4	0.0	I1JVA4_SOYBN; Uncharacterized protein
STRING	GLYMA04G10630.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G098400.1.p
Entrez Gene	100805420

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]