 |
Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.04G096300.1.p |
| Common Name | GLYMA_04G096300, LOC100801328 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
GATA |
| Protein Properties |
Length: 351aa MW: 37868.4 Da PI: 4.3969 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.04G096300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 46.8 | 4.1e-15 | 200 | 236 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
C++Cg+ + Tp +Rrgp g++tLCnaCGl+++ kg+
Glyma.04G096300.1.p 200 CHHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 236
****998888************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MATVNPQPLQ FEDPAIPVDD DDDDDDDGGD DDAMDELEDA NVNSVNVTNA ASVNHEAVVA 60
MPSRTSELTL SFEGEVYVFP AVTPQKVQAV LLLLGGRDVQ AGVPAVEPPF DQSNRDMGDT 120
PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR MHRKNGQFAS LKESPGSSNW 180
DSAQSSGQVG TSHSESVRRC HHCGVGENNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL 240
SKGGRNLSVE QSDLDTPIDV KPTSVLEGEL PGIHDEQGSS EDPSKSNAAD GSSNHAVNPS 300
DEELPETAEH FTNVLPLGIG HSSTNDSEQE PLVELSNPSD TDIDIPGNFD *
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.10958 | 0.0 | cotyledon| epicotyl| hypocotyl| leaf| meristem| root| somatic embryo| vegetative bud |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
