PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GATA

Protein Properties

Length: 310aa MW: 33838 Da PI: 6.151

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G096200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.8	9.3e-16	221	257	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++R+gp+g+++LCnaCGl+++ +g+ Glyma.04G096200.1.p 221 CTHCGISSksTPMMRKGPSGPRSLCNACGLFWANRGT 257 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.615	85	120	IPR010399	Tify domain
SMART	SM00979	2.9E-13	85	120	IPR010399	Tify domain
Pfam	PF06200	2.6E-13	88	119	IPR010399	Tify domain
PROSITE profile	PS51017	12.521	152	194	IPR010402	CCT domain
Pfam	PF06203	7.5E-16	152	194	IPR010402	CCT domain
PROSITE profile	PS50114	9.803	215	264	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.0E-14	215	268	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.09E-11	217	266	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.3E-14	220	262	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.4E-13	221	257	IPR000679	Zinc finger, GATA-type
CDD	cd00202	3.67E-15	221	265	No hit	No description
PROSITE pattern	PS00344	0	221	248	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MFGSINQIVS AEDTDGPVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAASDHHIH 60 YSSHTIEDDG AAVEDVSAVP GPEISIDNSS QLTLSFRGQV YVFDAVTPDK VQAVLLLLGG 120 NELTSGSQCA ELSSRNQTGE EEYPAKCSLP HRAASLNRFR QKRKERCFDK KVRYSVRQEV 180 ALRMHRNKGQ FTSSKNQDGT NSWGSDQESG QDAVQSETLC CTHCGISSKS TPMMRKGPSG 240 PRSLCNACGL FWANRGTLRD LSKRNLEHSL TPPEQVDEGS NNNALDIRSG IPAQHNNLVN 300 DSKALVSDR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.57025	0.0	leaf\| somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G096200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096895	0.0	BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523794.1	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	2e-82	GAT25_ARATH; GATA transcription factor 25
TrEMBL	I1JV86	0.0	I1JV86_SOYBN; Uncharacterized protein
STRING	GLYMA04G10330.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-84	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Glyma.04G096200.1.p
Entrez Gene	100809517

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]