PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G095300.5.p
Common NameGLYMA_04G095300, LOC100805773
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 494aa    MW: 52988.8 Da    PI: 9.8356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G095300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-0985130144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
  Glyma.04G095300.5.p  85 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 130
                          789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.94380138IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-1182135IPR009057Homeodomain-like
SuperFamilySSF466891.29E-1083136IPR009057Homeodomain-like
SMARTSM007173.3E-984136IPR001005SANT/Myb domain
PfamPF002492.3E-885130IPR001005SANT/Myb domain
CDDcd116608.63E-1286135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MIASRTLSES APSSSTIEAP LTINVPVCHS SRTPIENSQP SNLMQGTSII FPVTVQRQTL  60
PTISSTDGIE TKGIVGGNMA SKRKRKAWSE EEDMQLRAAV QRWGEGNWAT MAKGDDFPIK  120
RSATQLAQRW SILRKKDGCT NTGTITSTQY TTAEQLATRH SLSLALDMPF KKLTAPGMTD  180
VKPSTSVKNQ AQIRNTTEKV SSSLVPPQQP SQQALLGSSD LHAKSKLADE KPVLKGNLIS  240
DHVVKSATAT LGTRVDPLSN TISQIKVAQV KNATDTKPAV SSLTKPSIST NLPSDPKNKH  300
VTSLADKGAQ VKHAVDTKPA VSSLIKPSIS TNLPSDPKNK HVTPLADKVP LKQVVNPTKE  360
LKVSDPSTTP KEKVQENEPP KVTTGSQVDS SLEKGRFEKG LETSTPLVKI SCGEEVSKDK  420
ANPVVVCEEQ GSVKKATENN NIDKGSQNLD HDKKIDSINQ SSNDQNANDK HVNLPVQDEL  480
SLSAKVVKSD GEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50950.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G095300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-109AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578283.10.0uncharacterized protein LOC100805773 isoform X2
TrEMBLK7KJ560.0K7KJ56_SOYBN; Uncharacterized protein
TrEMBLK7KJ590.0K7KJ59_SOYBN; Uncharacterized protein
STRINGGLYMA04G10185.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-32MYB_related family protein