PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G095300.4.p
Common NameGLYMA_04G095300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 570aa    MW: 62097.1 Da    PI: 7.5666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G095300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09161206144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
  Glyma.04G095300.4.p 161 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 206
                          789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.943156214IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-11158211IPR009057Homeodomain-like
SuperFamilySSF466891.72E-10159212IPR009057Homeodomain-like
SMARTSM007173.3E-9160212IPR001005SANT/Myb domain
PfamPF002492.8E-8161206IPR001005SANT/Myb domain
CDDcd116602.26E-11162211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MPEKKNKKVS FTEEDAVTLM QRYDATTVFT LLQEVAHYPH PKIDWCELVK KSATEISNAR  60
EYQMLWRHLA YRHSLPEIFE DGDEPLDDDS DLECELEAFP PVSVECASEA AACVKPSNLM  120
QGTSIIFPVT VQRQTLPTIS STDGIETKGI VGGNMASKRK RKAWSEEEDM QLRAAVQRWG  180
EGNWATMAKG DDFPIKRSAT QLAQRWSILR KKDGCTNTGT ITSTQYTTAE QLATRHSLSL  240
ALDMPFKKLT APGMTDVKPS TSVKNQAQIR NTTEKVSSSL VPPQQPSQQA LLGSSDLHAK  300
SKLADEKPVL KGNLISDHVV KSATATLGTR VDPLSNTISQ IKVAQVKNAT DTKPAVSSLT  360
KPSISTNLPS DPKNKHVTSL ADKGAQVKHA VDTKPAVSSL IKPSISTNLP SDPKNKHVTP  420
LADKVPLKQV VNPTKELKVS DPSTTPKEKV QENEPPKVTT GSQVDSSLEK GRFEKGLETS  480
TPLVKISCGE EVSKDKANPV VVCEEQGSVK KATENNNIDK GSQNLDHDKK IDSINQSSND  540
QNANDKHVNL PVQDELSLSA KVVKSDGEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50950.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G095300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-63AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578283.10.0uncharacterized protein LOC100805773 isoform X2
TrEMBLA0A0R0K6A60.0A0A0R0K6A6_SOYBN; Uncharacterized protein
STRINGGLYMA04G10185.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-46MYB_related family protein