PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 189aa MW: 20817.6 Da PI: 6.5288

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G084000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.3e-19	28	77	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Glyma.04G084000.1.p 28 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 77 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.13E-32	27	87	No hit	No description
Pfam	PF00847	5.7E-13	27	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.406	28	85	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-37	28	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.9E-32	28	86	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.89E-22	28	86	IPR016177	DNA-binding domain
PRINTS	PR00367	1.7E-10	29	40	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	51	67	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MRVSTETEPE TKKIKRIRGG GDSSKHPLYR GVRMRNWGKW VSEIREPRKK SRIWLGTFPT 60 PEMAARAHDV AALSIKGPAA ILNFPHLANS LPRPASLAPR DVQAAAAKAA HMDPSSLSSL 120 VSAMDLSSAS DELSQIIELP SLESTDDGSV DLKKEFVFVD SLDAWMYQPP FGFDTEQDTG 180 FEGLMWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-21	19	89	5	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.54874	0.0	meristem\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
miR156 regulates miR172 expression and controls the level of an AP2. The latter, either directly or indirectly, controls the expression of nonsymbiotic hemoglobin, which is essential for regulating the levels of nodulation. [PMID: 23980625]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G084000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ228454	0.0	FJ228454.1 Glycine max AP2 domain-containing transcription factor 2 (AP2-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001239694.1	1e-137	AP2 domain-containing transcription factor 2
Refseq	XP_028228244.1	1e-137	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-70	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A445KYB7	1e-135	A0A445KYB7_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBL	C9WA60	1e-135	C9WA60_SOYBN; AP2 domain-containing transcription factor 2
STRING	GLYMA04G08901.1	1e-136	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	8e-73	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G084000.1.p
Entrez Gene	100813069

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Yan Z, et al. miR172 regulates soybean nodulation. Mol. Plant Microbe Interact., 2013. 26(12): p. 1371-7 [PMID:23980625]