PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G081700.1.p
Common NameGLYMA_04G081700, LOC100811459
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 586aa    MW: 64543 Da    PI: 8.1594
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.6e-15129167241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ +
  Glyma.04G081700.1.p 129 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVD 167
                          89**************************.********986 PP
2TCR50.93e-16211250140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.04G081700.1.p 211 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 250
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-18128168IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.094129251IPR005172CRC domain
PfamPF036386.8E-12130165IPR005172CRC domain
SMARTSM011148.4E-20211252IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12214249IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEQSETASDL APRKLARQLD FAAVYGDPSH QKLPPPLPPP QSPLRPPSHS PLRLQLDLQP  60
PGQRPWLYSE AQEQQPGLYS PRPKLVSPVR RIPHPVVKFP VKVLQVVKPE SPRSQPRCNV  120
ELKDTTPKKQ KQCNCKNSRC LKLYCECFAA GIYCDGCNCV NCHNNVDNEA ARQEAVGITL  180
ERNPNAFRPK IASSPQEQRD SKECEIKVIG KHNKGCHCKK SGCLKKYCEC FQANILCSEN  240
CKCMDCKNFE GSDERIAIFH KDYNLVHMKQ AANATISGAV GSSGYGTHIT PKKRKNQEMF  300
PGKSAMDQTV NMTAQYLQEI DPMASSPSSL SDSFISDPSN TRISGSSRST YRSVLADVLK  360
PNNVKNLCSL FVVLSRVAAK TNAEMRGKVD QQTKTGNFEA SVASSAKSLQ ETRDVHQPAC  420
DDHVNKDEAE AVDVAHYNRP LSPETLALMC DEQDDMLFGN CSADGVACNS TFQNMIQKSF  480
NSDGCTDVYR EQERLILTKF LDILRGLVTH GSIKETMCSS LTKKGERSKK EPADNGNNGA  540
ETNVGSEKGI QSNCFANYLI PSIAKISQTN YAITNGHGNN DLSLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-301212602132Protein lin-54 homolog
5fd3_B3e-301212602132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G081700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523732.20.0protein tesmin/TSO1-like CXC 5
RefseqXP_028228213.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-129TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445KXD50.0A0A445KXD5_GLYSO; Protein tesmin/TSO1-like CXC 5 isoform A
TrEMBLK7KIV60.0K7KIV6_SOYBN; Uncharacterized protein
STRINGGLYMA04G08670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-113Tesmin/TSO1-like CXC domain-containing protein